Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05920 1104 / 0 Subtilase family protein (.1) AT5G67360 822 / 0 ARA12 Subtilase family protein (.1) AT3G14067 761 / 0 Subtilase family protein (.1) AT5G51750 758 / 0 ATSBT1.3 subtilase 1.3 (.1) AT4G34980 719 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 717 / 0 Subtilase family protein (.1) AT1G04110 660 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT1G01900 604 / 0 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 566 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 541 / 0 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G131500 [exp] 784 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.015G133800 [exp] 783 / 0 AT5G51750 1113 / 0.0 subtilase 1.3 (.1) Potri.002G120400 [exp] 779 / 0 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 777 / 0 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.005G145300 [exp] 763 / 0 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 763 / 0 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.001G167300 [exp] 751 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.009G133400 [exp] 745 / 0 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.004G173900 [exp] 742 / 0 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033431 [exp] 1206 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 1200 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 793 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 790 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 788 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 775 / 0 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 717 / 0 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10037449 [exp] 714 / 0 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10013154 [exp] 687 / 0 AT3G14067 915 / 0.0 Subtilase family protein (.1) Lus10041382 [exp] 667 / 0 AT1G01900 825 / 0.0 subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.006G141200.2 pacid=42767340 polypeptide=Potri.006G141200.2.p locus=Potri.006G141200 ID=Potri.006G141200.2.v4.1 annot-version=v4.1 ATGGTCTCCTCCTCCATGGCCGGGATTTGGCCGCTCGCTGTCCTCCCCCTCCTCCTGTCCCTCTCCCTATCCATCTCCACCACCGCGAAACAAACCTACA TAGTTCACATGAAACACAACACAAAACCAGACTCCTTCCCAACCCACCATGACTGGTACACTGCAAGCCTCCAATCCGTTACTTCCACTCCTGACTCCCT CCTCTACACTTACACCAATGCATTTGACGGCTTTGCTGCCTCCCTCAGTGACGAAGAAGTTGAATTGTTGAAACAATCTCAATCTGTCGTCGATGTTTAC GAAGACACTCTTTACTCCCTCCACACCACTCGCACTCCTGCTTTTTTGGGCCTTAATACTGACTTAGGACTCTTAGATGGACATCACGCCATGGGCATTA ATCAATCATCAAATGATGTTATTGTAGGTGTTCTTGATACTGGGATCTGGCCCGAATCGAAGTCTTTTTATGATTCGGGAATGCCTGAGATCCCGACTCG ATGGAAGGGAGAATGTGAGTCTGGCCCTGATTTCAGCCCCAAACTCTGCAACAAGAAGCTGATAGGCGCTCGATATTTTTCAAAGGGATACCATATGGCA TCTGGTGGTAGAGGTTTCTTAAAAAAGCCTAAAGAGACCGAATCTCCGCGTGACCAAGACGGGCACGGCACTCACACTGCAAGCACGGCCGCCGGGTCTC AAGTGGTTAATGCGAGTTTACTTGGGTATGCTAGCGGCACGGCGCGTGGAATGGCCACCAGCGCGCTTGTTGCTTCTTACAAGGTTTGCTGGGTATCTGG TTGTTTTGGTTCAGACATTCTGGCAGGAATGGATCGGGCAATTGAAGATGGCGTGGATGTCATGTCCCTTTCTCTTGGTGGCGGATCGGCTCCTTATTAT CGCGATACGATTGCAATCGGTGCTTTTACGGCGATGGAGAGAGGCATCTTCGTGTCTTGCTCGGCTGGTAACAGTGGGCCTAATATAGCTTCACTCGCAA ATGTGGCTCCTTGGATCATGACCGTTGGTGCTGGAACTTTGGACCGGGATTTTCCCGCTTATGCTGTAATGGGAAATAAGAAACGGTTCGCTGGTGTTTC TTTGTATAGCGGAGCAGGAATGGGGAAAAAACCGGTGGGTTTGGTTTATAAGAAGGGAAGCAATAGCACATGCAATTTGTGTATGCCCGGCTCACTGGAA CCGCAGTTAGTCCGTGGTAAGGTGGTGATTTGTGATAGGGGGATTAATCCACGTGTCGAAAAGGGTGCGGTCGTGAGGGATGCAGGTGGGGTTGGGATGA TATTGGCCAATACGGCGGAGAGTGGGGAAGAATTGGTGGCGGACAGTCACTTGTTGCCGGCTGTGGCGGTGGGGAGGAAAGTTGGGGATGTGATTCGAGA GTATGTTAAGAGCGATCCAAATCCAACGGCTGTTTTGAGTTTTGGTGGGACAGTTTTGGATGTAAGGCCTTCACCAGTTGTAGCAGCATTTAGTTCAAGA GGGCCAAATTTGGTGACAAGGGAGATATTGAAGCCGGATTTGATTGGGCCTGGAGTCAATATATTGGCTGCTTGGTCAGAGACAATTGGACCCACTGGAC TAGAGACCGACACTAGAAAAACTCAGTTCAATATCATGTCAGGTACATCTATGTCATGCCCACACATAAGTGGTGTCGCTGCATTGCTGAAAGCAGCCCA CCCAACATGGAGCCCAAGTGCAATTAAATCTGCTCTCATGACCACTGCCTATGTTAGTGACAACACCAACTCCCCGCTCCAGGACGCTGCAGGTGGTGCA CTTTCAAACCCATGGGCTCATGGGTCTGGTCATGTAGACCCACAGAAAGCTCTCTCGCCGGGCCTCGTGTATGATATCTCAGCAGATGAATACGTAGCAT TCTTGTGCTCTCTGGACTACACCATTGAGCATGTCCAAGCCATTGTCAAGCGCCCAAACATCACTTGTTCGAGGAAATTCAACAACCCTGGTAATCTCAA CTATCCGTCGTTCTCAGTGGTGTTTACCAACAATAGGGTTGTAAGGTACACCCGAGAATTGACAAATGTGGGCGCTGCTGGCTCCATTTATGAAGTAGCC GTGACTGGGCCGCAAGCGGTGCAGGTGACGGTGAAGCCTTCTAAGCTTGTTTTTAAAAATGTTGGGGACAAGCTTAGATACACAGTGACTTTTGTGGCAA GAAAAGGTGCCAGCCTCACTGGTAGATCTGAATTTGGTGCAATCGTGTGGAGAAATGCTCAACACCAAGTTAGGAGCCCAGTTGCATTTTCATGGACGCA GTTGTGA
AA sequence Show only first row Show all	>Potri.006G141200.2 pacid=42767340 polypeptide=Potri.006G141200.2.p locus=Potri.006G141200 ID=Potri.006G141200.2.v4.1 annot-version=v4.1 MVSSSMAGIWPLAVLPLLLSLSLSISTTAKQTYIVHMKHNTKPDSFPTHHDWYTASLQSVTSTPDSLLYTYTNAFDGFAASLSDEEVELLKQSQSVVDVY EDTLYSLHTTRTPAFLGLNTDLGLLDGHHAMGINQSSNDVIVGVLDTGIWPESKSFYDSGMPEIPTRWKGECESGPDFSPKLCNKKLIGARYFSKGYHMA SGGRGFLKKPKETESPRDQDGHGTHTASTAAGSQVVNASLLGYASGTARGMATSALVASYKVCWVSGCFGSDILAGMDRAIEDGVDVMSLSLGGGSAPYY RDTIAIGAFTAMERGIFVSCSAGNSGPNIASLANVAPWIMTVGAGTLDRDFPAYAVMGNKKRFAGVSLYSGAGMGKKPVGLVYKKGSNSTCNLCMPGSLE PQLVRGKVVICDRGINPRVEKGAVVRDAGGVGMILANTAESGEELVADSHLLPAVAVGRKVGDVIREYVKSDPNPTAVLSFGGTVLDVRPSPVVAAFSSR GPNLVTREILKPDLIGPGVNILAAWSETIGPTGLETDTRKTQFNIMSGTSMSCPHISGVAALLKAAHPTWSPSAIKSALMTTAYVSDNTNSPLQDAAGGA LSNPWAHGSGHVDPQKALSPGLVYDISADEYVAFLCSLDYTIEHVQAIVKRPNITCSRKFNNPGNLNYPSFSVVFTNNRVVRYTRELTNVGAAGSIYEVA VTGPQAVQVTVKPSKLVFKNVGDKLRYTVTFVARKGASLTGRSEFGAIVWRNAQHQVRSPVAFSWTQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05920			Subtilase family protein (.1)		Potri.006G141200 [exp]	0	1
AT3G54000			unknown protein		Potri.010G195800 [exp]	6.48	0.8363
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.001G217700 [exp]	6.92	0.8178
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.011G071800 [exp]	9.38	0.7703
AT5G50150			Protein of Unknown Function (D...		Potri.012G088300 [exp]	11.18	0.7633
AT4G20430			Subtilase family protein (.1.2...		Potri.001G440300 [exp]	11.91	0.8459
AT1G38131			O-fucosyltransferase family pr...		Potri.005G173500 [exp]	12.96	0.7782
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Potri.001G289300 [exp]	15.49	0.7608
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Potri.002G251700 [exp]	17.88	0.8088	Pt-TMKL1.1
AT4G23740			Leucine-rich repeat protein ki...		Potri.001G095200 [exp]	18.16	0.8315
AT3G09070			Protein of unknown function (D...		Potri.016G111400 [exp]	28.39	0.7595

Compare expression of checked genes

Potri.006G141200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.