Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07990 373 / 4e-124 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT1G01280 348 / 2e-114 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT5G04330 343 / 3e-112 Cytochrome P450 superfamily protein (.1) AT4G36220 342 / 1e-111 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT2G40890 333 / 1e-108 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT3G48310 328 / 7e-107 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT4G12300 321 / 7e-104 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT3G48270 319 / 2e-103 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT4G22710 320 / 4e-103 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT3G26330 317 / 2e-102 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G051300 [exp] 939 / 0 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066400 [exp] 642 / 0 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 634 / 0 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G040200 [exp] 593 / 0 AT5G07990 389 / 2e-130 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066600 [exp] 581 / 0 AT5G07990 382 / 1e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066800 [exp] 578 / 0 AT5G07990 379 / 2e-126 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167800 [exp] 556 / 0 AT5G07990 353 / 2e-116 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.012G089900 [exp] 401 / 6e-135 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.015G086000 [exp] 394 / 3e-132 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017742 [exp] 649 / 0 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 635 / 0 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10013150 [exp] 633 / 0 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10035502 [exp] 365 / 7e-121 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10021158 [exp] 358 / 3e-118 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017961 [exp] 358 / 4e-118 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10022303 [exp] 354 / 2e-116 AT4G36220 680 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10019457 [exp] 352 / 6e-116 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10021620 [exp] 352 / 9e-116 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10041511 [exp] 351 / 1e-115 AT4G36220 687 / 0.0 ferulic acid 5-hydroxylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.006G141400.1 pacid=42767239 polypeptide=Potri.006G141400.1.p locus=Potri.006G141400 ID=Potri.006G141400.1.v4.1 annot-version=v4.1 ATGCAAAACCCAGTCTCAGTGACACCACCACCTAATACAACCACGAATTTGATCTCAACAATGGAGGCTTTCTCGTTGGTTGTTTTGGTATTAGCATGGG TTTCTGCTCTTCTTTACCTCCCAAAATTTTTCAAATCCTTGCGTAACCCATTGAAACTGCCACCAGGTCCTAAACCATGGCCGATTATCGGCAATTTCGA CCTTCTTGGTCCTCTCCCTCACCAGTCTCTTCATCAATTGTCTCTCAAGTATGGTAAAACGATGCAGCTCCAATTTGGGTCCTACCCAGTTTTTGTTACC TCATCACTAGACATAGCAAAACAGATTTTGAAGACTTACGATCACATGTTTGCTAGCAGACCTCAAACTGCTGCTGGCAAGTACACAACTTATGAGTATT CCGATCTCGCTTGGGCACCCTATGGACCTTACTGGCGCCAAGGTCGTAAGATTTACCTCACTGAGCTGTTTAGTGCGAAAAGACTGGAGTCTTATGAGTA TATGCGTATAGAGGAGATGAGGGAATTTACAAGACGTCTATATCGCAACTGTGGTAAGACTATTGAGCTTAAAGATTATCTCTCTCATTACACTCTTAGC ATTATTAGCAGGATTGTGTTGGGAAAGAAGTACTTTAGCGCATCGGAATCCGAGAAGGAAATAGTTACACTTGAGGAATTTCAAGAAATGCTCGATGAGT TGTTCTTGCTTAATGGTGTGTTGAACATTGGGGACTGGATCCCATGGCTGGATTTCTTGGACATGCAGGGGTATGTCAAGAGAATGAAGGAGCTCAAGGT AAGATTTGATAGGTTCCATGACCATGTCATTGATGAACACAACGCAAAGAGAAAAGCAACCAAAAATTGGCAGCCCAAAGACATGGTGGATCTGCTCTTG CAGCTTGCTGATGACCCTGAGCTTGAAGTTAAGCTAACTAGAGACAACATCAAGGGGCTGACACAGGACCTGATTGCTGGAGGAACAGATACCGCTGCTA CAATGGGGGATTGGTCAATGTCAGAACTCTTGAAAAAGCCCCAGTTATTCAAAAGAGTAACGGACGAACTGGATAGAGTTGTTGGGAGAGATAGATGGGT GGAGGAGAAGGACATCCCACAACTTCCTTACATAGAAGCAATAATGAAAGAGGCAATGAGGATGCATCCATCTGCTGTTATGCTTGCACCCCATTTGGCC CTTCAAGATAGCAAAGTCGGTGGCTATGACATCCCTAAAGGAACCAGAATCTTCATTAACACATGGAGCATGGGTAGAGACCCTGATCTGTGGGAAGATC CTGAAGATTTCAGGCCAGAAAGGTTCATCGGTAAAGGAATTGATATTAAAGGACATAACTTTGAGTTGTTGCCGTTTGGTTCTGGGAGAAGAATGTGCCC TGGCTATCCCCTTGGGACGAAGATGATTCTTGTTAGCTTGGCCAACATGCTGCATGGATTCACCTGGGAATTGCCTCCGGGAATGAAACCACAAGATGTG AAAAGAGATGAGGTTTTTGGATTGGCAACACAAAGAAAGTACCCAACTGTTGCAGTGGCAAAGCCTCGACTCCCGCTTCATCTTTATAATTAG
AA sequence Show only first row Show all	>Potri.006G141400.1 pacid=42767239 polypeptide=Potri.006G141400.1.p locus=Potri.006G141400 ID=Potri.006G141400.1.v4.1 annot-version=v4.1 MQNPVSVTPPPNTTTNLISTMEAFSLVVLVLAWVSALLYLPKFFKSLRNPLKLPPGPKPWPIIGNFDLLGPLPHQSLHQLSLKYGKTMQLQFGSYPVFVT SSLDIAKQILKTYDHMFASRPQTAAGKYTTYEYSDLAWAPYGPYWRQGRKIYLTELFSAKRLESYEYMRIEEMREFTRRLYRNCGKTIELKDYLSHYTLS IISRIVLGKKYFSASESEKEIVTLEEFQEMLDELFLLNGVLNIGDWIPWLDFLDMQGYVKRMKELKVRFDRFHDHVIDEHNAKRKATKNWQPKDMVDLLL QLADDPELEVKLTRDNIKGLTQDLIAGGTDTAATMGDWSMSELLKKPQLFKRVTDELDRVVGRDRWVEEKDIPQLPYIEAIMKEAMRMHPSAVMLAPHLA LQDSKVGGYDIPKGTRIFINTWSMGRDPDLWEDPEDFRPERFIGKGIDIKGHNFELLPFGSGRRMCPGYPLGTKMILVSLANMLHGFTWELPPGMKPQDV KRDEVFGLATQRKYPTVAVAKPRLPLHLYN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.006G141400 [exp]	0	1
AT1G65880		BZO1	benzoyloxyglucosinolate 1 (.1)		Potri.004G082000 [exp]	1.73	0.9883
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G014500 [exp]	5.74	0.9838
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Potri.006G275900 [exp]	6.78	0.9881
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G291300 [exp]	9.89	0.9736
AT1G19190			alpha/beta-Hydrolases superfam...		Potri.009G104600 [exp]	10.09	0.9874
AT1G24420			HXXXD-type acyl-transferase fa...		Potri.006G034132 [exp]	10.58	0.9795
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G312800 [exp]	10.67	0.9708
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066400 [exp]	12.48	0.9804
					Potri.005G184800 [exp]	12.56	0.9612
AT3G11210			SGNH hydrolase-type esterase s...		Potri.016G115800 [exp]	13.03	0.9861	CPRD49.1

Compare expression of checked genes

Potri.006G141400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.