Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05940 639 / 0 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT5G35580 585 / 0 Protein kinase superfamily protein (.1) AT2G26290 503 / 3e-177 ARSK1 root-specific kinase 1 (.1) AT1G72540 484 / 9e-170 Protein kinase superfamily protein (.1) AT5G01020 460 / 1e-160 Protein kinase superfamily protein (.1) AT1G61590 460 / 2e-160 Protein kinase superfamily protein (.1) AT5G15080 415 / 8e-142 Protein kinase superfamily protein (.1) AT2G07180 410 / 1e-140 Protein kinase superfamily protein (.1.2) AT5G56460 406 / 1e-139 Protein kinase superfamily protein (.1) AT3G28690 404 / 4e-139 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G219300 [exp] 589 / 0 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.003G066300 [exp] 573 / 0 AT2G05940 540 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G168000 [exp] 557 / 0 AT2G05940 519 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G128500 [exp] 476 / 7e-167 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.003G105400 [exp] 464 / 3e-162 AT1G61590 597 / 0.0 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 460 / 2e-160 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 459 / 5e-160 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 432 / 2e-150 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1) Potri.003G222600 [exp] 424 / 5e-147 AT5G56460 585 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034897 [exp] 606 / 0 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 601 / 0 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10011930 [exp] 555 / 0 AT2G05940 530 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10027638 [exp] 551 / 0 AT2G05940 529 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10013148 [exp] 510 / 8e-180 AT2G05940 484 / 3e-169 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10008110 [exp] 508 / 9e-179 AT2G05940 486 / 2e-170 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033294 [exp] 459 / 8e-161 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1) Lus10034757 [exp] 456 / 2e-158 AT1G61590 624 / 0.0 Protein kinase superfamily protein (.1) Lus10036762 [exp] 451 / 6e-156 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 417 / 2e-142 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G141500.1 pacid=42766981 polypeptide=Potri.006G141500.1.p locus=Potri.006G141500 ID=Potri.006G141500.1.v4.1 annot-version=v4.1 ATGATAATGACGGTCGAAAAAACCACATGGAGATCGATGGTTTCAAGCTGTTTCAAGCCTAATGAGATCTCACCATCCAAACCCAAGAAAATTGTTACGA AACAAACTTCATTCCAGAGGATTTCAATGTCCGATTTGAGCAATCCCAGCACACTATCTGAGGATCTCTCAATATCTCTCGCTGGTTCTAACCTTCACGT CTTTACACTCCCCGAGTTGAAGGTGATCACACAGAATTTCGCAGCAAGCAACTTTCTCGGTGAAGGAGGGTTTGGACCGGTGCACAAAGGTTTCATCGAT GACAAGCTTAGGCCTGGCTTGAAGGCTCAGCCTGTGGCCGTTAAGCTTTTGGACTTGGATGGCTCGCAGGGACACAGGGAGTGGTTGGCGGAAGTGATCT TTCTAGGGCAACTGAGGCATCCACATCTTGTGAAGTTGATTGGTTATTGTTGCGAGGAGGAGCATAGGCTTCTGGTTTATGAATACATGCCCCGGGGAAG TTTAGAGAATCAGTTATTTAGAAGGTATTCGGTATCATTACCGTGGTCAGCAAGAACGAAAATTGCAGTTGGAGCTGCAAAGGGCCTAGCCTTCCTCCAC GAATCAGAAAAGCCTGTCATATACAGAGATTTCAAAGCTTCCAACATTTTGCTGGACTCGGATTATACGCCGAAACTTTCAGATTTTGGACTAGCAAAAG ATGGTCCTGAAGGGTCAGACACACACGTTTCCACCCGAGTCATGGGAACGCAAGGCTATGCCGCTCCTGAATACATCATGACAGGTCACTTGACATCAAG GAGTGATGTGTATAGTTTTGGAGTAGTACTACTGGAGCTTCTTACAGGGAGAAGGTCTGTGGACAAAAGCCGTCCCCAAAGAGAACAGAACCTGGTAGAG TGGGCAAGGCCCATGTTGAATGATCCCCGGAAACTCGGCCGGATAATGGACCCGAGACTGGAGGGTCAATACTCAGAAACTGGAGCTCGAAAGGCAGCTG AATTGGCTTATCAATGTCTGAGCCACAGGCCAAAACATAGACCAACAATGAGCATAGTTGTTAACACTCTGGATCCACTCAAGGATTTTGAAGACGTTCC TATTGGACCTTTTGTGTACACAGTTCCAACTGAAAATCTTAAAGAAGATGATAACAAGGAGTGTGAAACCAAGAGGGATCAGACGAAGAAAGAGAAGAAC GGGCAGCAGCACCAAAGGCATCAACTCCATCGAGGCCAAAAGCGTCAAGGTAGATCCCGGCCGAGGTCTCCGACCATTCACTCAGAAACTGCTCTAAGCC AAAATCATGGAAATGGATTGCACTCTCCTTTGCACCATAAAGCCAGGGGATCGAGCCTAAACAATATTTAG
AA sequence Show only first row Show all	>Potri.006G141500.1 pacid=42766981 polypeptide=Potri.006G141500.1.p locus=Potri.006G141500 ID=Potri.006G141500.1.v4.1 annot-version=v4.1 MIMTVEKTTWRSMVSSCFKPNEISPSKPKKIVTKQTSFQRISMSDLSNPSTLSEDLSISLAGSNLHVFTLPELKVITQNFAASNFLGEGGFGPVHKGFID DKLRPGLKAQPVAVKLLDLDGSQGHREWLAEVIFLGQLRHPHLVKLIGYCCEEEHRLLVYEYMPRGSLENQLFRRYSVSLPWSARTKIAVGAAKGLAFLH ESEKPVIYRDFKASNILLDSDYTPKLSDFGLAKDGPEGSDTHVSTRVMGTQGYAAPEYIMTGHLTSRSDVYSFGVVLLELLTGRRSVDKSRPQREQNLVE WARPMLNDPRKLGRIMDPRLEGQYSETGARKAAELAYQCLSHRPKHRPTMSIVVNTLDPLKDFEDVPIGPFVYTVPTENLKEDDNKECETKRDQTKKEKN GQQHQRHQLHRGQKRQGRSRPRSPTIHSETALSQNHGNGLHSPLHHKARGSSLNNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.006G141500 [exp]	0	1
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Potri.018G100400 [exp]	9.00	0.7347	GAE1.1
AT2G23140			RING/U-box superfamily protein...		Potri.006G251000 [exp]	14.00	0.7010
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.012G043501 [exp]	21.21	0.7132
AT1G76140			Prolyl oligopeptidase family p...		Potri.005G247300 [exp]	27.00	0.6864
AT3G24530			AAA-type ATPase family protein...		Potri.006G158600 [exp]	28.98	0.6370
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.007G024300 [exp]	29.24	0.6088
AT1G28160	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G069300 [exp]	33.76	0.6244
AT5G18400			Cytokine-induced anti-apoptosi...		Potri.002G062200 [exp]	38.15	0.6957
AT4G33440			Pectin lyase-like superfamily ...		Potri.007G105800 [exp]	41.18	0.6116
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.001G095600 [exp]	48.47	0.5940

Compare expression of checked genes

Potri.006G141500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.