Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ELSA.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45310 590 / 0 Cysteine proteinases superfamily protein (.1.2) AT5G60360 585 / 0 SAG2, AALP SENESCENCE ASSOCIATED GENE2, aleurain-like protease (.1.2.3) AT5G43060 234 / 6e-73 Granulin repeat cysteine protease family protein (.1) AT4G36880 227 / 2e-71 CP1 cysteine proteinase1 (.1) AT1G47128 229 / 5e-71 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT5G50260 225 / 9e-71 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT1G06260 219 / 6e-69 Cysteine proteinases superfamily protein (.1) AT1G09850 222 / 1e-68 XBCP3 xylem bark cysteine peptidase 3 (.1) AT3G48340 216 / 2e-67 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT3G19390 218 / 8e-67 Granulin repeat cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G302100 [exp] 244 / 1e-76 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.009G098100 [exp] 243 / 3e-76 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.007G047600 [exp] 232 / 2e-73 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.014G024100 [exp] 233 / 9e-73 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.011G064900 [exp] 227 / 8e-72 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 223 / 4e-70 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 223 / 7e-70 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 222 / 1e-69 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 222 / 1e-69 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033428 [exp] 573 / 0 AT3G45310 565 / 0.0 Cysteine proteinases superfamily protein (.1.2) Lus10034895 [exp] 536 / 0 AT3G45310 524 / 0.0 Cysteine proteinases superfamily protein (.1.2) Lus10014087 [exp] 240 / 3e-75 AT5G43060 622 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10020734 [exp] 233 / 5e-74 AT5G45890 390 / 4e-136 senescence-associated gene 12 (.1) Lus10020730 [exp] 230 / 6e-73 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10026073 [exp] 229 / 2e-72 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10027877 [exp] 232 / 3e-72 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10002827 [exp] 232 / 4e-72 AT1G47128 609 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10032406 [exp] 228 / 5e-72 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020723 [exp] 227 / 8e-72 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00112 [poplar] [flax] Peptidase_C1 Papain family cysteine protease CL0125 [poplar] [flax] PF08246 [poplar] [flax] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Potri.006G141700.2 pacid=42768234 polypeptide=Potri.006G141700.2.p locus=Potri.006G141700 ID=Potri.006G141700.2.v4.1 annot-version=v4.1 ATGGCTCGTGTCGCTGGGTTGGTGGTCTCATCGATCTTGTTCCTGCTATGCTGCGTTGCAGCGGGGTCAAGTTTCGATGAATCCAATCCAATCAAACTCG TATCTGACCGTCTCCATGACTTCGAATCTTCTTTTGTTAAGGTCTTAGGCCAATCTCGTCGGGCTCTCTCCTTTGCTCGTTTTGCTCACAGGCATGGAAA GAGGTATGAGACAGAGGGGGAGATGAAGTTAAGGTTTGCAATATTCTCGGAGAGTTTGGATTTGATTAGATCCACCAATAAAAAGGGCTTGCCTTACACT CTTGGTCTTAATCAATTTGCTGATTGGACATGGCAAGAGTTCCAAAAGTACAGACTGGGAGCTGCCCAAAATTGCTCTGCAACCACAAGGGGCAATCACA AGCTTACGAACGCTCTTCTTCCTGAAACGAAAGACTGGAGGGAAGAAGGCATAGTCAGTCCCGTTAAGAATCAAGGTCACTGTGGATCTTGCTGGACTTT CAGCACCACTGGAGCTCTAGAGGCTGCTTACCACCAGGCTTTTGGGAAAGGAATCTCTCTGTCTGAACAGCAGCTTGTGGACTGTGCTAGAGCATTTAAT AACTTTGGCTGCAATGGTGGGTTGCCATCCCAAGCCTTTGAATACATTAAATTCAATGGTGGCCTTGACACCGAAGAAGCATATCCTTACACTGGAAAAG ATGACGCCTGCAAGTTCTCATCGGAGAACGTTGGTGTCCGAGTTGTCGAATCAGTCAACATTACACTGGGTGCTGAAGACGAATTGAAGCATGCAGTTGC ATTTGTTCGTCCAGTTAGCGTTGCGTTCGAGGTAGTAGGTAGTTTCCGTCTGTACAAGGAAGGAGTTTACACCACCAGCACTTGTGGCAGTACTCCCATG GATGTGAACCATGCTGTTCTTGCAGTTGGTTATGGAGTAGAGAATGGTATCCCATATTGGCTGATCAAGAACTCTTGGGGAGAAGACTGGGGCGACAACG GTTACTTTAAGATGGAGATGGGGAAGAACATGTGTGGTATTGCAACCTGTGCATCATATCCTGTCGTTGCAGCTTGA
AA sequence Show only first row Show all	>Potri.006G141700.2 pacid=42768234 polypeptide=Potri.006G141700.2.p locus=Potri.006G141700 ID=Potri.006G141700.2.v4.1 annot-version=v4.1 MARVAGLVVSSILFLLCCVAAGSSFDESNPIKLVSDRLHDFESSFVKVLGQSRRALSFARFAHRHGKRYETEGEMKLRFAIFSESLDLIRSTNKKGLPYT LGLNQFADWTWQEFQKYRLGAAQNCSATTRGNHKLTNALLPETKDWREEGIVSPVKNQGHCGSCWTFSTTGALEAAYHQAFGKGISLSEQQLVDCARAFN NFGCNGGLPSQAFEYIKFNGGLDTEEAYPYTGKDDACKFSSENVGVRVVESVNITLGAEDELKHAVAFVRPVSVAFEVVGSFRLYKEGVYTTSTCGSTPM DVNHAVLAVGYGVENGIPYWLIKNSWGEDWGDNGYFKMEMGKNMCGIATCASYPVVAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45310			Cysteine proteinases superfami...		Potri.006G141700 [exp]	0	1	Pt-ELSA.1
AT5G48370			Thioesterase/thiol ester dehyd...		Potri.014G174800 [exp]	2.64	0.9414
AT3G52070			unknown protein		Potri.009G059100 [exp]	3.87	0.9547
AT1G13680			PLC-like phosphodiesterases su...		Potri.011G144900 [exp]	4.89	0.9552
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G057901 [exp]	5.29	0.9534
AT3G49160			pyruvate kinase family protein...		Potri.012G002500 [exp]	5.38	0.9176
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Potri.002G236400 [exp]	6.00	0.9457	IAGLU.2
AT5G05710			Pleckstrin homology (PH) domai...		Potri.010G190500 [exp]	6.92	0.9373
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.002G028700 [exp]	7.74	0.9405	VFCYSPRO.1
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Potri.015G103800 [exp]	8.36	0.9458	LJLCB2.1
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Potri.001G343600 [exp]	11.22	0.9354

Compare expression of checked genes

Potri.006G141700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.