Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06000 587 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT1G63130 229 / 3e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 227 / 1e-66 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 229 / 2e-66 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 224 / 6e-66 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G65560 228 / 4e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 223 / 4e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16640 216 / 1e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 221 / 2e-63 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 219 / 9e-63 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G038400 [exp] 252 / 6e-76 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034300 [exp] 246 / 1e-75 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050500 [exp] 247 / 4e-74 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 246 / 6e-74 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 246 / 6e-74 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 244 / 2e-73 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 244 / 3e-73 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 238 / 8e-71 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074700 [exp] 235 / 1e-70 AT1G62930 481 / 1e-164 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004615 [exp] 683 / 0 AT2G06000 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10004533 [exp] 653 / 0 AT2G06000 517 / 4e-180 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10003347 [exp] 262 / 3e-84 AT2G06000 248 / 4e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10014245 [exp] 229 / 1e-67 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10022861 [exp] 226 / 2e-66 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014247 [exp] 223 / 2e-65 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 221 / 6e-64 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 222 / 8e-64 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026747 [exp] 223 / 1e-62 AT1G06710 1190 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 219 / 1e-62 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G141800.1 pacid=42769688 polypeptide=Potri.006G141800.1.p locus=Potri.006G141800 ID=Potri.006G141800.1.v4.1 annot-version=v4.1 ATGACCCTCTTTTCCTTAACTGGACCTTTCAGGGTTCGAGCATCCACTATTGCCATTGCCCGTTTTCACGGTCAAACTCAAGGAGGATCTCGCTTTTACC CTGATAGACAGGTAATTCAAAACCCAGAATCTTGGTTTGTCAAAGTAGTTTCCACACTTTTTGTCAATTCACATTCTTTGGATGCTTGTTTGAATTACTT GTGTGAAAAGTTGACACCTTTGATTGCATTTGAGGTAATCAAAAGGTTTAATAATCCAAAAGTGGGTTTCAAGTTTTTGGAGTTCAGTAGATTGAATTTG AATGTCAATCATTGCTATTCCACTTATAATTTGCTTATGAGGTCCTTATGTCAAATGGGTCACCATGATTTGGTGAATATTGTGTTTGATTACATGGGAA GTGATGGGCATTTGCCTGATAGTAAACTTTTAGGATTTTTGGTAACTTGGATGGCGCAGGCGAGCGATTTTGATATGGTTAAGAAATTGCTTGCTGAGGT TCAGGGTAAGGAGGTTCGCATTAATTCATTTGTCTATAATAATTTGTTGAGTGTGTTGGTTAAGCAGAATCAAGTGCACGAGGCCATTTACTTGTTTAAA GAGTATTTGGCAATGCAATCTCCTCCTGACACTTGGACTTTTAATATTCTTATCCGAGGTCTTTGCAGAGTAGGGGGTGTGGATAGAGCTTTTGAATTTT TCAAGGATATGGAGAGTTTTGGATGTTTACCTGATGTTGTCACATATAATACTCTTATAAATGGATTGTGCAAGGCAAATGAAGTACAGAGAGGATGTGA ATTGTTCAAGGAAATTCAGTCTAGAAGTGATTGTTCACCAGACATTGTGACTTATACATCAATTATATCGGGGTTTTGCAAGTCAGGTAAGATGAAGGAG GCCTCAAATTTATTTGAGGAGATGATGAGGTCTGGGATTCAGCCCAATGTAATCACTTTTAATGTTCTTATTGATGGCTTTGGCAAGATTGGGAACATAG CTGAAGCAGAAGCAATGTACAGAAAGATGGCATATTTTGATTGCTCAGCTGATGTAGTCACCTTCACTTCCTTGATTGATGGCTACTGTCGAGCTGGTCA GGTGAACCACGGCTTGAAGTTTTGGAATGTGATGAAAACAAGAAATGTATCTCCAACTGTTTATACTTATGCTGTTCTCATTAATGCTCTTTGCAAGGAG AATAGACTTAATGAAGCTCGTGATTTTCTGGGGCAAATAAAGAATAGTAGTATAATTCCAAAACCATTTATGTACAATCCTGTGATTGATGGGTTCTGCA AGGCTGGCAATGTGGATGAGGGGAATGTGATTCTAAAAGAGATGGAAGAGAAGAGATGTGACCCTGATAAGGTGACATTTACCATTCTTATTATCGGGCA TTGCGTGAAAGGAAGAATGTTTGAAGCAATTAATATTTTTAATAGAATGTTGGCAACCAGGTGTGCCCCTGATAACATCACGGTTAATTCTTTGATATCC TGCCTTTTGAAGGCTGGGATGCCTAATGAAGCCTATCGCATTAGGAAAATGGCATTAGAGGATCGTAACTTGGGTTTGTCATCTGTTGAGAAAGCTATTC CTTTGAGGACAAATACAGACATCCCAGTGGCAGTTTGA
AA sequence Show only first row Show all	>Potri.006G141800.1 pacid=42769688 polypeptide=Potri.006G141800.1.p locus=Potri.006G141800 ID=Potri.006G141800.1.v4.1 annot-version=v4.1 MTLFSLTGPFRVRASTIAIARFHGQTQGGSRFYPDRQVIQNPESWFVKVVSTLFVNSHSLDACLNYLCEKLTPLIAFEVIKRFNNPKVGFKFLEFSRLNL NVNHCYSTYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFK EYLAMQSPPDTWTFNILIRGLCRVGGVDRAFEFFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKE ASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKE NRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLIS CLLKAGMPNEAYRIRKMALEDRNLGLSSVEKAIPLRTNTDIPVAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G06000			Pentatricopeptide repeat (PPR)...		Potri.006G141800 [exp]	0	1
AT3G62190			Chaperone DnaJ-domain superfam...		Potri.002G188300 [exp]	2.00	0.8397
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.011G085000 [exp]	7.21	0.8443	LCOSC2.5
AT2G02955		MEE12	maternal effect embryo arrest ...		Potri.010G169500 [exp]	14.83	0.8410
AT3G18680			Amino acid kinase family prote...		Potri.007G110201 [exp]	16.43	0.8337
AT1G19010			unknown protein		Potri.017G074300 [exp]	17.54	0.8306
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Potri.002G205150 [exp]	22.64	0.8043
AT5G35910			Polynucleotidyl transferase, r...		Potri.013G062800 [exp]	26.49	0.8068
AT2G38450			unknown protein		Potri.008G075000 [exp]	29.79	0.8173
AT5G12100			pentatricopeptide (PPR) repeat...		Potri.010G249800 [exp]	32.40	0.6848
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Potri.019G081100 [exp]	36.00	0.6687

Compare expression of checked genes

Potri.006G141800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.