Plant FIBer expression Database

Potri.006G141900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G77550 1188 / 0 tubulin-tyrosine ligases;tubulin-tyrosine ligases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027620
[exp]
1264 / 0 AT1G77550 1186 / 0.0 tubulin-tyrosine ligases;tubulin-tyrosine ligases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0179 ATP-grasp PF03133 TTL Tubulin-tyrosine ligase family
Representative CDS sequence
>Potri.006G141900.3 pacid=42769718 polypeptide=Potri.006G141900.3.p locus=Potri.006G141900 ID=Potri.006G141900.3.v4.1 annot-version=v4.1
ATGACCAAAATACAAGCTTACGAGGACTTCGTGAAGGTCCACGGCATCCTTTTAGCAGCCTCAGGACTACCTCGTACACTGCACCGCAAACTGTTCGACA
AACTTACTTCCGAGACTTTCGATGGCGGCGCCTACTTCCAAGTCGACCCATGCCAGGATGGCCGTCAGAGGCGCCTCCTCCTTACCTCTGCCGCCTCCAT
GCCCAAAGATTCCAACGTTTTTCTCATTGACCACGCCTGGACTTTTCGCCTCTCCGATGCTTATAAACAGCTTCAAGAAGTGCCAGGGTTAGCCCAGAGA
ATGGCTGCTTTGATGTGTGTGGATATTGATTCAAATTCCGATGTTGAAGAGATAGATGGGGATGGAGTTTCACGAGACACCTATTCAAAATTGAATGTCA
CTGACATTGTTGAGAATGAAATTGGTTATGCGAAAGAGAGAGGCTATGACACTGTTAAGTGGTTGGAGCTTGAGGAACTTGACATTGACGATGACATGCT
TCTCTCTCTTGATTTGTCTAGTAAATTTCCGGATTTACTAGCACTTAGCCTATGTGGAAACAAGCTCGAGAATGTTGAAATAGTTGTGCAGGAAGTTACC
AAATTGAAAAACCTAAAAGCTCTCTGGCTGAATAACAATCCAGTTCTAGAAAACTGTGATGGTTGTATGGCAGATACAATTTTCAAGGGATGTCCAGGGC
TCGAAATCTACAACTCATGTTTCACTAGTAATTTTGGTGAGTGGGCCTTGGGATTTTGCGGAGGAGTTTATGAGAAGGATAATCCTTGCCCTATCCATCA
GGACAACCATCCATTGCAGAGTGTGACATCTCTCGACCTTTCAAACAGAAGTATTCATTCTCTCATTAACAAGGCATTTTCTCCTGTTGAGATGCCTTCT
CTTTCACATCTGAATATTCGAGGAAATCCTCTGAAGCAGAATTCAGTTAGTGAGCTGTTCAAAGTATTGAAGGGGTTTACTAGTTTGCAAACTTTAGAGG
TGGATTTACCTGGACCCCTAGGAGAGAGTGCTATAGAAATTCTTGAATCTGTTCCAAATCTTTCTCAGTTGAATGGCGTCAATGTATCAAAAATATTAGA
AACTGGAAACCATGTAATCGATGCTGTACTTCAGCCACGCCTTCCTGAATGGACAGCTGAAGAGCCTCTTGCTGATCGTGTTATTAATGCAATGTGGTTA
TATTTGATGACATATAGACTTGCAGACGAGGAAAAGATTGATGAAACCTCTGTGTGGTATGTAATGGATGAACTAGGTTCAGCTTTAAGGCACAGTGATG
AACCAAATTTCAGGGTGGCTCCTTTTCTCTTCATGCCAGAGGGAAATCTGGATTCTGCTGTGAGCTATTCCATATTATGGCCAATCCAGAATGTTCAAAA
TGGAGATGAATGCACTCGTGATTTCCTATTTGGTATTGGGGAGGACAAGCAACGTTCTGCCAGGCTTACAGCATATTTCCATACACCACAATATTATTTT
ATTCAGGAGTATGAGAAATTCCATCAGAAGTTGCAATCAAAAAGTTCAACTCCCTTGCCAGTGAAGTCATCTTCCAGCAGAACCTTACGTCGTACTGATG
GATGTGCTTTGCGTGTGTACACTGACTTACCTCAAGTGGAAGGATTTTTGACACGTACTGAATTTATAATCACCACAGAGTTGAAGGATGCAGACATTAT
ATGGACAGGCATGCAGGTGGATGATGATGTCAAAAGAGCTGCTGGAATTACAGATCAGCAATATATAAACCAATTTCCTTTCGAAGCTTGTCTTGTCATG
AAACATCATTTGGCAGAGACTATTCAAAAGGCACATGGATCTCCTGATTGGTTGCATCCTACTTACAATTTAGAATCACATCTCTCTCAACTTATTGGCG
ACTATTATGCACGCAAAAGAGATGGAATGAACAACCTATGGATCTTAAAACCATGGAACATGGCCCGGACTATTGATACAACTGTAACAGATAATTTGTC
TGCTATTATCCGCCTGATGGAAACTGGTCCAAAAATATGCCAGAAATATATCGAGCATCCTGCTCTGTTCGAAGGCAAGAAATTTGATATCCGTTATATA
GTACTGGTTCGCAGTGTGAAGCCTCTGGAACTGTTCCTTGCAGATGTTTTCTGGGTTAGGTTGGCAAACAACCAATACACTCTTGACAAGCACAGCCTTT
TTGAGTACGAGACCCACTTTACTGTTATGAACTATCGTGGAATATTGAATCACAAGAACACTCCAGAGTTTGTGAAGGAATTTGAACAGGAGCACCAAGT
TAAATGGTTGGATATCCATGAGAGAGTGAGAAATATGATTCGATCTGTTTTCGAGGCAGCTGCAACAGTACATCCAGAGATGCATAGTCCAATGTCCAGG
GCAATGTATGGCGTGGATGTCATGCTTGATAGCTCTTTCCAGCCAAAGTTATTGGAGGTCACTTACTGTCCAGACTGTACAAGAGCATGCAAGTATGATA
CACAAGCTATAGGTGGAGGGGGAGAATTATTGAAAGGTAGTGATTTCTACAATTATGTGTTTGGTTGTCTCTTTCTTGATGAAACTAGACATGTGTGCCC
ATTGTAA
AA sequence
>Potri.006G141900.3 pacid=42769718 polypeptide=Potri.006G141900.3.p locus=Potri.006G141900 ID=Potri.006G141900.3.v4.1 annot-version=v4.1
MTKIQAYEDFVKVHGILLAASGLPRTLHRKLFDKLTSETFDGGAYFQVDPCQDGRQRRLLLTSAASMPKDSNVFLIDHAWTFRLSDAYKQLQEVPGLAQR
MAALMCVDIDSNSDVEEIDGDGVSRDTYSKLNVTDIVENEIGYAKERGYDTVKWLELEELDIDDDMLLSLDLSSKFPDLLALSLCGNKLENVEIVVQEVT
KLKNLKALWLNNNPVLENCDGCMADTIFKGCPGLEIYNSCFTSNFGEWALGFCGGVYEKDNPCPIHQDNHPLQSVTSLDLSNRSIHSLINKAFSPVEMPS
LSHLNIRGNPLKQNSVSELFKVLKGFTSLQTLEVDLPGPLGESAIEILESVPNLSQLNGVNVSKILETGNHVIDAVLQPRLPEWTAEEPLADRVINAMWL
YLMTYRLADEEKIDETSVWYVMDELGSALRHSDEPNFRVAPFLFMPEGNLDSAVSYSILWPIQNVQNGDECTRDFLFGIGEDKQRSARLTAYFHTPQYYF
IQEYEKFHQKLQSKSSTPLPVKSSSSRTLRRTDGCALRVYTDLPQVEGFLTRTEFIITTELKDADIIWTGMQVDDDVKRAAGITDQQYINQFPFEACLVM
KHHLAETIQKAHGSPDWLHPTYNLESHLSQLIGDYYARKRDGMNNLWILKPWNMARTIDTTVTDNLSAIIRLMETGPKICQKYIEHPALFEGKKFDIRYI
VLVRSVKPLELFLADVFWVRLANNQYTLDKHSLFEYETHFTVMNYRGILNHKNTPEFVKEFEQEHQVKWLDIHERVRNMIRSVFEAAATVHPEMHSPMSR
AMYGVDVMLDSSFQPKLLEVTYCPDCTRACKYDTQAIGGGGELLKGSDFYNYVFGCLFLDETRHVCPL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G77550 tubulin-tyrosine ligases;tubul... Potri.006G141900
[exp]
0 1
AT1G80680 NUP96, SAR3, MO... PRECOCIOUS, MODIFIER OF SNC1,3... Potri.003G180100
[exp]
2.82 0.8344 PRE.1
AT1G09620 ATP binding;leucine-tRNA ligas... Potri.004G226700
[exp]
3.87 0.8385
AT1G49540 ELP2, AtELP2 Elongator subunit 2, elongator... Potri.010G119600
[exp]
5.29 0.7976
AT5G12290 DGS1 dgd1 suppressor 1 (.1) Potri.009G022200
[exp]
6.00 0.7996
AT1G29790 S-adenosyl-L-methionine-depend... Potri.011G079000
[exp]
6.92 0.7815
AT4G38180 FAR1_related FRS5 FAR1-related sequence 5 (.1) Potri.011G145800
[exp]
6.92 0.8063
AT5G19750 Peroxisomal membrane 22 kDa (M... Potri.006G032500
[exp]
7.34 0.8238
AT3G30841 Cofactor-independent phosphogl... Potri.017G109500
[exp]
9.48 0.7996
AT5G07900 Mitochondrial transcription te... Potri.004G222000
[exp]
13.03 0.7950
AT4G26900 HISN4, HISHF, A... HIS HF (.1) Potri.001G267400
[exp]
15.71 0.7931 HF.1

Potri.006G141900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.