Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06010 287 / 7e-100 ORG4 OBP3-responsive gene 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G065800 [exp] 363 / 4e-130 AT2G06010 299 / 4e-105 OBP3-responsive gene 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020742 [exp] 231 / 8e-78 AT2G06010 233 / 7e-79 OBP3-responsive gene 4 (.1) Lus10029795 [exp] 218 / 1e-72 AT2G06010 218 / 4e-73 OBP3-responsive gene 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G142000.1 pacid=42768848 polypeptide=Potri.006G142000.1.p locus=Potri.006G142000 ID=Potri.006G142000.1.v4.1 annot-version=v4.1 ATGGATTCTGGTTCAAATGGAGAGGAGCCCACTTCATGGGAAGAGCTTTACAATATCAATTTCATACCGTCGGAGTTGTTTCTCAAGTTCAGAAAGGAAA TTGAGGGGATTCGAGTTGGTGTTAATTTAGAGTTCTATAATGCTCCAATCAATGAATTCCAAGGCAAGATTGTTCTGAAACCCTTATCCCCGGAACGGAG GTGGAAATTCACATATGAGGCAATACATCAGGATGTACGCATTCTTTCAAAGAAGATTCCTGTTACCAAGTTTCTAAATCTCCAGGTTGGCATAGGCCAT AATTTTCAGTTGCATTCTACTGGTTGGAATTGGAAGCTTACAACCTGTTTAGGTGGAGATGGCATATCTAGGATTCAGAATAAGACATCATTCGGGTTGT TCCCTGGCATGGATTTGCGGTTTGGATGGAGAGCAGATTATGTTATTCCAGAAATTACCGGGGCTTTGGGTACTGGTGAGCCATTGTTCAACATGAACTC TGGACGACTGCAAGCATCATTAGATAGAGTTGAGGCCATTCTAACCCATCCATCACGACCGGTACTAGATGAAAAGAACTTCATATTGAACCGAACGTGG CAGGAAAAGGATGCTCAGCATGCATGGGATTTGAAAGACCCTGACCAGTGA
AA sequence Show only first row Show all	>Potri.006G142000.1 pacid=42768848 polypeptide=Potri.006G142000.1.p locus=Potri.006G142000 ID=Potri.006G142000.1.v4.1 annot-version=v4.1 MDSGSNGEEPTSWEELYNINFIPSELFLKFRKEIEGIRVGVNLEFYNAPINEFQGKIVLKPLSPERRWKFTYEAIHQDVRILSKKIPVTKFLNLQVGIGH NFQLHSTGWNWKLTTCLGGDGISRIQNKTSFGLFPGMDLRFGWRADYVIPEITGALGTGEPLFNMNSGRLQASLDRVEAILTHPSRPVLDEKNFILNRTW QEKDAQHAWDLKDPDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Potri.006G142000 [exp]	0	1
AT2G11890			adenylate cyclases (.1.2)		Potri.003G198200 [exp]	12.48	0.5918
AT3G08890			Protein of unknown function, D...		Potri.006G104000 [exp]	14.69	0.5858
AT1G23780			F-box family protein (.1)		Potri.005G109700 [exp]	19.18	0.5349
AT3G27310		PUX1	plant UBX domain-containing pr...		Potri.001G264500 [exp]	26.85	0.5391
AT1G49170			Protein of unknown function (D...		Potri.005G056500 [exp]	41.92	0.5398
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Potri.018G107300 [exp]	53.57	0.5224	EIF.5
AT4G14270			unknown protein		Potri.010G182800 [exp]	53.58	0.5031
AT1G16180			Serinc-domain containing serin...		Potri.003G186500 [exp]	72.11	0.5045
AT4G13830		J20	DNAJ-like 20 (.1.2)		Potri.001G319100 [exp]	81.44	0.4993	Pt-DNAJ.2
AT1G15060			Uncharacterised conserved prot...		Potri.012G053700 [exp]	82.15	0.5024

Compare expression of checked genes

Potri.006G142000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.