Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06040 543 / 0 unknown protein AT5G21900 260 / 6e-77 RNI-like superfamily protein (.1) AT1G21410 61 / 2e-09 SKP2A F-box/RNI-like superfamily protein (.1) AT3G58530 58 / 1e-08 RNI-like superfamily protein (.1) AT1G77000 54 / 3e-07 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT5G23340 51 / 3e-06 RNI-like superfamily protein (.1) AT4G15475 44 / 0.0004 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G220600 [exp] 454 / 6e-149 AT2G06040 427 / 1e-139 unknown protein Potri.005G088800 [exp] 57 / 5e-08 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G195800 [exp] 52 / 8e-07 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.002G074700 [exp] 50 / 4e-06 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.018G130800 [exp] 47 / 8e-05 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G104900 [exp] 44 / 0.0005 AT5G57900 377 / 8e-132 SKP1 interacting partner 1 (.1) Potri.017G056400 [exp] 44 / 0.0005 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2) Potri.005G140000 [exp] 43 / 0.0005 AT5G67140 334 / 2e-117 F-box/RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033320 [exp] 576 / 0 AT2G06040 517 / 7e-174 unknown protein Lus10034779 [exp] 531 / 1e-177 AT2G06040 471 / 5e-156 unknown protein Lus10017169 [exp] 499 / 4e-166 AT2G06040 436 / 4e-143 unknown protein Lus10021558 [exp] 115 / 7e-27 AT2G06005 428 / 3e-149 FRIGIDA interacting protein 1 (.1.2) Lus10040998 [exp] 59 / 9e-09 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 56 / 1e-07 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10018942 [exp] 55 / 2e-07 AT1G21410 513 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10012294 [exp] 54 / 2e-07 AT3G58530 474 / 7e-169 RNI-like superfamily protein (.1) Lus10028645 [exp] 54 / 5e-07 AT1G21410 520 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10015980 [exp] 49 / 2e-05 AT3G58530 442 / 4e-156 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G142200.1 pacid=42768101 polypeptide=Potri.006G142200.1.p locus=Potri.006G142200 ID=Potri.006G142200.1.v4.1 annot-version=v4.1 ATGGCTGTGCTCAGGTCCCGCGGAATACTCTCAACAATACCCTCAAACAAAAAAGGGCCCACACCCGAACCTGTCACTCCAACTCGAACTCGCGAACCTT CCACTCACCAATCCCCTCCCACCCCCAACCCCCCCGGTGTTTCCCTTTTGGGCTCCGACTCTGCCCCTCCACGCAGGCGGAGCCTTCGTCTCGCTTCGAA GTCACTTCCTTCTGCCGATGCCTCCCTTCTAACTCCAACCCGCAAGAGGAAGAAGGGGAGTGATGGTAAACAAGGTCGGCTTGTTAATGAAGGTGATGTG GTTGAGAAAATGACCGAACGAGATGTTGGAGGTGAAGTATTGAGGGTTTTAAGTTTGAGGTCTGGGAAAAGGGTTGTTGATAATTGTAATATTGAAATTG AAGGTGAAGAAGTCAAGGGTTCGAGTGTTCTGCGTACAAAAGGGAAGGGAAAGGGAAGGGGGCATTTGGGTAAGAAAGTGTTAAAGTTGGATGTTCAAGA GGAGTTGGTGGAAATTTTGAATGATAACGCGGTCGAGAGAAGTGAAAATTTGGAGAAGTTGAGTGAGTCGTCAAGGGGAAAGAGGAAATGTACAGGGGAA GTAAAAATGGAGAGAGGTGAAGAGGGTGGTGTTGCTGTGGAGGACCTGGGGAAAAGCCCTAGTGCTAATGAGAGTGGGATTTCAACAAGAGGAAGGAGAA AATATAACAGAGAAGTGAAAGTGGAGGGAGTTAAAGAGGGTGTTGTCGAGGGATTGAAGGAAAACCCATGTACAGATGAGAATGGCACTTCAAGGAGAGG GAGGAGGTATAGTAGAGAGGAAAAAGAGAAGAGAAGTAAAGAGGGTGCTGTTGTTATTGAGGAATTAGGGGAAAATCCAGTTGCTCTTGAGGGTGGAAGT TCAAGGGGAAGGATGAGGTATAGCAGAGAAGAGAAAGGGAAGGGGAAATTGGTTGTTGATGATGGTTTGATATCAAATGCAAAGGATATGTTGCAATTAG AACCCAGAGTTAAGAATCTGGTTGATGGTTTGGCAGAGAGTGTGGTTCTGGAAGAGAGAAAGGAGGGTGCGAGTGCAAGAAGTAAAGTGCCTGAATCAAG AATGGAGCAATTTCGTGATATAGCAAGGCAGAATGCTTCTCGATTTGCTCATTTTGAAGTTCAGGAGCATGAGGCAGACCATCATGACGTAGAAATGCCA TCTGTGGAAGAAGAGCAGGACAAAGTTGAAGACTGGCCTGGTCCTTTCTCTACTGCTATGAAGATTATTAGGGATAGAGCAAATAGGCTTAACTTGCAAC AGAGGGGCTCCACTTCAGAGAAGGAAAAACATGTGCCCATAACTTGGATGCCAAAAACTGATCGGGCGTGTAAGCCTTCAAAAGGATTGGTTCCTTCACT GCAAGAATTATGCATGAAAATTCTAGTGAAGAATGCCGATGCAATTGCTTCACTTGAACATGTCCCAGATGCTTTGAGGCATAGGCTATGCCAATTGCTC TGTGATTCTCGGAGAATGAATGCTCATTTTTTGGCTCTTCTTGTCCGCGGATCACCTATGGAGATACGTATTAGGGATTGTTCGTGGCTAGCAGAGGAAG AGTTCACAAAAATTTTTGAGGTGTGCGACTCGCGCAATTTAACGGTTCTACAACTTGACCAATGTGGACGCTGCATGGCAGATTATACTTTACTTGCTAC TTTAGCTCGGTCACCAGGTAGCTTGCCTAGGTTAACTACTTTATCCATCAGTGGAGCATGCCGACTCTCAGATGCTGCACTTTGTTCACTTGTTTCTTCT GCCCCTGCCCTACAATCTTTAAATCTCAGCCAGTGCTCCCTTCTTACCTCTGCCAGTATTGATACTTTAGCTGATTCGTTGGCAACAAGTTTGCGGGAAC TGTACATTAATGATTGCCAAAGCATTCAACCCATGCTCATTTTGCCAGCACTGAAGAAACTAGAACATTTAGAAGTGTTGTCCCTGTCTGGAATTCAAAC CATTAATGATAATTTTTTGAGGGGATTTATCGTTGCACGTGGCCATAATATAAAGGAGCTTGTTTTGACTGATTGTGTGAAATTGACTGATTCTTCCATG AAAGTCATAGCTGAAACCTGCTCTAAATTATGTACACTTGATCTTGGTAACTTGAGGAAATTGACAGATTCTGCTTTGGGATTTCTTGCAAATGCTTGCC GAGAAATCCATACTTTGAAACTCTGCCGCAATGCATTCAGTGATGAAGCTATTGCTGCATTTTTGGAAACTTCTGGAGAGCTTTTAAAAGAACTTTCACT GAATAATGTTACGAAGGTTGGCCACTGTACAGCATTATCACTTGCTAGACGTTCAAGAAAGTTGCTAAGTTTGGATTTGTCATGGTGCCGGAACTTAACA AATGAGGCTTTGGGTTTGATTGTGGATAGTTGTTTATCATTGAAGGTGCTTAAACTTTTTGGATGCAGTCAGGTTACAAATGTTTTCTTAGATGGTCACT CAAATTCAGATGTACAAATTATTGGCTTGAAGACGTCTCCTGTACTGGAACATATCAGGGTTCCTGAACTGCAAGAATTTGCATTGCGTTATTCCTCAGT GTCTTCTATCTGA
AA sequence Show only first row Show all	>Potri.006G142200.1 pacid=42768101 polypeptide=Potri.006G142200.1.p locus=Potri.006G142200 ID=Potri.006G142200.1.v4.1 annot-version=v4.1 MAVLRSRGILSTIPSNKKGPTPEPVTPTRTREPSTHQSPPTPNPPGVSLLGSDSAPPRRRSLRLASKSLPSADASLLTPTRKRKKGSDGKQGRLVNEGDV VEKMTERDVGGEVLRVLSLRSGKRVVDNCNIEIEGEEVKGSSVLRTKGKGKGRGHLGKKVLKLDVQEELVEILNDNAVERSENLEKLSESSRGKRKCTGE VKMERGEEGGVAVEDLGKSPSANESGISTRGRRKYNREVKVEGVKEGVVEGLKENPCTDENGTSRRGRRYSREEKEKRSKEGAVVIEELGENPVALEGGS SRGRMRYSREEKGKGKLVVDDGLISNAKDMLQLEPRVKNLVDGLAESVVLEERKEGASARSKVPESRMEQFRDIARQNASRFAHFEVQEHEADHHDVEMP SVEEEQDKVEDWPGPFSTAMKIIRDRANRLNLQQRGSTSEKEKHVPITWMPKTDRACKPSKGLVPSLQELCMKILVKNADAIASLEHVPDALRHRLCQLL CDSRRMNAHFLALLVRGSPMEIRIRDCSWLAEEEFTKIFEVCDSRNLTVLQLDQCGRCMADYTLLATLARSPGSLPRLTTLSISGACRLSDAALCSLVSS APALQSLNLSQCSLLTSASIDTLADSLATSLRELYINDCQSIQPMLILPALKKLEHLEVLSLSGIQTINDNFLRGFIVARGHNIKELVLTDCVKLTDSSM KVIAETCSKLCTLDLGNLRKLTDSALGFLANACREIHTLKLCRNAFSDEAIAAFLETSGELLKELSLNNVTKVGHCTALSLARRSRKLLSLDLSWCRNLT NEALGLIVDSCLSLKVLKLFGCSQVTNVFLDGHSNSDVQIIGLKTSPVLEHIRVPELQEFALRYSSVSSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G06040			unknown protein		Potri.006G142200 [exp]	0	1
AT2G45520			unknown protein		Potri.014G072400 [exp]	1.00	0.8105
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.014G121601 [exp]	5.09	0.8042
AT5G58370			P-loop containing nucleoside t...		Potri.019G128000 [exp]	6.70	0.7539
AT4G01560		MEE49	maternal effect embryo arrest ...		Potri.002G182600 [exp]	7.34	0.7822
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.004G040000 [exp]	9.32	0.8038
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G091200 [exp]	9.48	0.7980
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Potri.003G150200 [exp]	9.59	0.7001
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Potri.013G145300 [exp]	9.89	0.7858
AT2G46040	ARID		ARID/BRIGHT DNA-binding domain...		Potri.014G086700 [exp]	11.22	0.7432
					Potri.005G043750 [exp]	13.41	0.8015

Compare expression of checked genes

Potri.006G142200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.