Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35570 843 / 0 O-fucosyltransferase family protein (.1) AT2G37980 616 / 0 O-fucosyltransferase family protein (.1) AT3G54100 594 / 0 O-fucosyltransferase family protein (.1) AT5G01100 577 / 0 O-fucosyltransferase family protein (.1) AT5G15740 392 / 6e-130 RRT1 O-fucosyltransferase family protein (.1) AT1G22460 393 / 1e-129 O-fucosyltransferase family protein (.1) AT5G64600 390 / 4e-129 O-fucosyltransferase family protein (.1) AT1G14020 385 / 2e-127 O-fucosyltransferase family protein (.1) AT3G02250 380 / 2e-125 O-fucosyltransferase family protein (.1) AT2G03280 368 / 7e-121 O-fucosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G109700 [exp] 593 / 0 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 587 / 0 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 404 / 1e-134 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 393 / 5e-130 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 389 / 7e-129 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 387 / 5e-128 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 387 / 9e-128 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 381 / 1e-125 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 378 / 9e-125 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017171 [exp] 808 / 0 AT5G35570 828 / 0.0 O-fucosyltransferase family protein (.1) Lus10021557 [exp] 796 / 0 AT5G35570 807 / 0.0 O-fucosyltransferase family protein (.1) Lus10035540 [exp] 590 / 0 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10017190 [exp] 588 / 0 AT2G37980 781 / 0.0 O-fucosyltransferase family protein (.1) Lus10027753 [exp] 588 / 0 AT3G54100 744 / 0.0 O-fucosyltransferase family protein (.1) Lus10021119 [exp] 588 / 0 AT3G54100 783 / 0.0 O-fucosyltransferase family protein (.1) Lus10028253 [exp] 541 / 0 AT2G37980 577 / 0.0 O-fucosyltransferase family protein (.1) Lus10040236 [exp] 532 / 0 AT2G37980 573 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 387 / 1e-127 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 379 / 1e-124 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.006G142400.2 pacid=42769341 polypeptide=Potri.006G142400.2.p locus=Potri.006G142400 ID=Potri.006G142400.2.v4.1 annot-version=v4.1 ATGGCTCACCATTCTCACCACCATAACCATAACTCAGCAAGCGATGGCGTTTCTCAAAGAGTTAACAGCCCTCGTTTCTCAGGTCCAATGACTCGCCGTG CTCACTCTTTCAAGCGCAACAACACCAGTTCTAACAACAACAGTAATGCCGGCAACGCCAACAGCAGCAACAATGGTAGCAACAACGTTAGTAACGGTAA CAGTAACAATAGTAGTCTTAGCCCCCATCTTGAGATTGATCTCCCCTTAAACTCTCCTAGATCTGAAACCGTTGATGGGTTTGAAAGGGAAAGTCACAGC AGGCAGAATCTGAGCCAAAGAGTTCATGGGGGTGTGGTTAGGATTTTGACAAATAAGAAAGGTAGTATTGGATCTGTGATTTTGGATTTTGGGTTCAAGG AAAGGAAGAAACTTGGCCACTGGATGTTCTTTTTCTTTTGCGGGCTTTGTTTGTTTCTGGGTGTTTTTAAGATTTGCTTATATGGGTGGTTTGGATCTAC CCTTGAAAGAGCTGCCTCCAATCAGGATGTATTCGGTTCCATCACCCGACAGGAACAAGACTCTTACCGATACATGGGATCAGAAAATGATCAGAAAAGA ATGATAATAGAAGTAGGCTCGGATGTGGTTGATAGACTGAATAAGAAGGCTGAATTCTCAGGTATCTGGTCCAAGCCCAATAGTGAAAATTTCACCCAAT GCATTGACCAGCCCGGAAATCACAAAAAGCTTGGTGCAAGGACAAATGGTTATATTCTCATAAATGCTAATGGTGGCTTAAATCAGATGAGATTTGGGAT TTGTGATATGGTAGCTGTAGCTAAAATTATGAAGGCAACGCTTGTCCTTCCCTCCCTTGATCACACCTCCTACTGGGCTGATGATAGTGGATTTAAGGAT TTGTTCAATTGGCAACATTTCATTGACACGCTGAAGGATGATGTCCATATTGTGGAGAAGTTGCCACCTGCCTATGATGGAATTGAGCCATTCAACAAAA CACTGATATCTTGGTCCAAGGTTCATTATTACAAAACCGAGGTCCTGCCATTGTTGAAGCAGCACAAAGTAATCTATTTTACTCACACTGATTCTCGTCT TGCCAACAATGGTCTCTCAGATTCCATACAAAAGTTGAGATGCCGTGCTAATTATAGGGCACTGAAATATTCTAAACCAATAGAAGAACTTGGAAACACC TTGGTCAGCAGAATGAGAGAAAATGGAAGCCGTTATCTTGCTCTCCATCTGAGGTATGAAAAGGATATGCTTGCATTTACAGGATGCAGCCATAATTTGA CAGCAGCAGAAGATGAAGAGCTACTTAGGATGCGATATGAAGTCAGCCACTGGAAAGAGAAAGAAATAAATGGGACAGAAAGAAGGTTGCTTGGCAATTG CCCATTGACCCCTAGGGAGACTTCCCTTTTGCTCAAAGGATTGGGTTTTCCATCCAGCTCTAGGATTTACTTGGTAGCTGGTGAAGCTTATGGGACTGGA AGCATGCAATACCTTTTAGATGACTTCCCAAACATCTTCTCACACTCCACTCTCTCCACAGAAGAGGAGCTGAATCCCTTCAAGGATCATCAGAACATGT TGGCTGGTCTAGACTATCTTGTTGCACTTCAAAGTGATGTGTTTGTCTACACTTATGATGGGAATATGGCGAAGGCAGTTCAAGGTCATAGGCAATTTGA GGAGTTTAAGAAAACAATCAATCCAGACAAGATGAATTTTGTGAAGCTTGTGGATGAGTTGGATGAAGGAAAAATATCTTGGAAGAAATTCAGTTCCAAA GTGCAAAAGCTTCACAAAGATCGAATTGGAGTTCCATATGCAAGGGAGCCTGGAGAGTTTCCAAAGCTGGAAGAAAGTTTCTTTGCAAATCCCCTTCCTG GATGTATTTGTGAAACAGCACAAGAAAAATAG
AA sequence Show only first row Show all	>Potri.006G142400.2 pacid=42769341 polypeptide=Potri.006G142400.2.p locus=Potri.006G142400 ID=Potri.006G142400.2.v4.1 annot-version=v4.1 MAHHSHHHNHNSASDGVSQRVNSPRFSGPMTRRAHSFKRNNTSSNNNSNAGNANSSNNGSNNVSNGNSNNSSLSPHLEIDLPLNSPRSETVDGFERESHS RQNLSQRVHGGVVRILTNKKGSIGSVILDFGFKERKKLGHWMFFFFCGLCLFLGVFKICLYGWFGSTLERAASNQDVFGSITRQEQDSYRYMGSENDQKR MIIEVGSDVVDRLNKKAEFSGIWSKPNSENFTQCIDQPGNHKKLGARTNGYILINANGGLNQMRFGICDMVAVAKIMKATLVLPSLDHTSYWADDSGFKD LFNWQHFIDTLKDDVHIVEKLPPAYDGIEPFNKTLISWSKVHYYKTEVLPLLKQHKVIYFTHTDSRLANNGLSDSIQKLRCRANYRALKYSKPIEELGNT LVSRMRENGSRYLALHLRYEKDMLAFTGCSHNLTAAEDEELLRMRYEVSHWKEKEINGTERRLLGNCPLTPRETSLLLKGLGFPSSSRIYLVAGEAYGTG SMQYLLDDFPNIFSHSTLSTEEELNPFKDHQNMLAGLDYLVALQSDVFVYTYDGNMAKAVQGHRQFEEFKKTINPDKMNFVKLVDELDEGKISWKKFSSK VQKLHKDRIGVPYAREPGEFPKLEESFFANPLPGCICETAQEK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35570			O-fucosyltransferase family pr...		Potri.006G142400 [exp]	0	1
AT3G50590			Transducin/WD40 repeat-like su...		Potri.005G136300 [exp]	5.19	0.9201
AT1G14540			Peroxidase superfamily protein...		Potri.008G022264 [exp]	7.93	0.9040
AT5G54370			Late embryogenesis abundant (L...		Potri.001G405650 [exp]	12.64	0.9068
AT2G34560			P-loop containing nucleoside t...		Potri.004G065100 [exp]	12.72	0.9063
					Potri.001G466500 [exp]	15.00	0.9067
AT1G10290		DRP2A, ADL6	DYNAMIN-RELATED PROTEIN 2A, dy...		Potri.003G001400 [exp]	16.52	0.9046	Pt-DH1.2
AT3G01750			Ankyrin repeat family protein ...		Potri.010G055700 [exp]	19.39	0.9044
AT5G46910			Transcription factor jumonji (...		Potri.001G137700 [exp]	19.59	0.8800
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.001G357600 [exp]	20.78	0.8966
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Potri.001G402400 [exp]	21.35	0.8737	Pt-MLO11.1

Compare expression of checked genes

Potri.006G142400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.