Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06050 603 / 0 AtOPR3, DDE1, OPR3, OPDA-REDUCTASE DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) AT1G76690 390 / 8e-135 OPR2, ATOPR2 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) AT1G76680 385 / 1e-132 OPR1, ATOPR1 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) AT1G09400 345 / 1e-117 FMN-linked oxidoreductases superfamily protein (.1) AT1G18020 296 / 3e-99 FMN-linked oxidoreductases superfamily protein (.1) AT1G17990 296 / 3e-99 FMN-linked oxidoreductases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G065600 [exp] 753 / 0 AT2G06050 599 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.004G212100 [exp] 696 / 0 AT2G06050 536 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.013G102700 [exp] 401 / 9e-139 AT1G76690 629 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G103000 [exp] 399 / 2e-138 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102800 [exp] 393 / 6e-136 AT1G76690 576 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102750 [exp] 393 / 7e-136 AT1G76690 580 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.003G004200 [exp] 389 / 3e-134 AT1G76680 558 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Potri.013G102900 [exp] 388 / 4e-134 AT1G76690 571 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.003G004600 [exp] 387 / 8e-134 AT1G76680 559 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028663 [exp] 613 / 0 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Lus10000966 [exp] 608 / 0 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Lus10013218 [exp] 390 / 2e-134 AT1G76690 553 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10001276 [exp] 385 / 6e-133 AT1G76680 597 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10009473 [exp] 376 / 5e-126 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10001275 [exp] 360 / 2e-122 AT1G76680 544 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10001274 [exp] 348 / 2e-118 AT1G76690 526 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10030737 [exp] 189 / 3e-57 AT1G76680 258 / 1e-84 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF00724 [poplar] [flax] Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family
Representative CDS sequence Show only first row Show all	>Potri.006G142800.1 pacid=42768866 polypeptide=Potri.006G142800.1.p locus=Potri.006G142800 ID=Potri.006G142800.1.v4.1 annot-version=v4.1 ATGGCGGAGAATAGAATCAAAGGAACCTCTCTGTTTTCTCCTTACAAGATGGGCAAGTTCAGCCTCTCTCACAGGGTGGTGCTGGCGCCCATGACAAGAT GCAGGGCGTTGTTTGGGATACCAGGGGATGCGCTGGTGGAGTACTACACGCAGAGATCAACTCCTGGCGGATTTCTCATCAGCGAAGGCACTATCATCTC TCCAACTGCTCCCGGGTTTCCTCATGTGCCTGGGATTTACTCAGATGCTCAAGTGGAGGCATGGAAGAAGGTAGTGAATGCGGTTCATGCCAAAGGGAGC ATCATCTTCTGTCAACTCTGGCACGTTGGCCGTGCATCTCATCAAGTTTATCAACCTGGTGGGGCTGCACCGATTTCATCAACAAACAAGGCCATCTCAA ACAGGTGGAGAATTCTCATGCCAGATGGGACCTATGGAACATACCCAGCACCTCGAGCCTTGGAAACCTCTGAAATACTAGAGGTTGTGGAGCATTATAG ACAGGCAGCCTTGAATGCCATTCGAGCAGGTTTTGATGGAATTGAGATCCATGGGGCTCATGGTTACCTTATCGATCAATTTTTAAAGGATGGGATCAAT GACAGAATAGATGAGTATGGTGGATCAATGGAAAACCGGTGCCGATTCTTAATGCAGGTGATTCAGGCAGTAGTCTCAGCTGTCGGCGCAGATCGTGTAG CTTTCCGAATGTCACCTGCAATTGATCACCTTGATGCCACAGACTCGGATCCACTCAACTTAGGCCTTTCAGTGGTTGAGAGAATTAACAAAATCCAGCT ACAGGTGGGTTCAAAACTCACCTATCTCCATGTCACTCAGCCACGGTACACAGCTTACGGCCAAACAGAGTCAGGCAGACCTGGCACCGAAGATGAAGAG GCCCAGATGATCAGGACTTGGAGAAGGGCATATCAGGGTACACTCATGTGCAGTGGTGGGTTCACTAGGGAGCTGGGAATACAAGCTGTAGCTGAAGGTG ACGCAGATTTGGTATCCTACGGCAGACTCTTTATCTCAAACCCAGACTTGGTTTTGAGATTGAAGGTTGATGCACCCCTGAATAAGTATATCAGGAAGAC TTTCTACAGCCAGGATCCTGTTGTTGGGTACACAGATTACCCTTTCCTAAGCAAAGCAAATGGAGGACAGGCACCACTCTCACGCCTTTGA
AA sequence Show only first row Show all	>Potri.006G142800.1 pacid=42768866 polypeptide=Potri.006G142800.1.p locus=Potri.006G142800 ID=Potri.006G142800.1.v4.1 annot-version=v4.1 MAENRIKGTSLFSPYKMGKFSLSHRVVLAPMTRCRALFGIPGDALVEYYTQRSTPGGFLISEGTIISPTAPGFPHVPGIYSDAQVEAWKKVVNAVHAKGS IIFCQLWHVGRASHQVYQPGGAAPISSTNKAISNRWRILMPDGTYGTYPAPRALETSEILEVVEHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGIN DRIDEYGGSMENRCRFLMQVIQAVVSAVGADRVAFRMSPAIDHLDATDSDPLNLGLSVVERINKIQLQVGSKLTYLHVTQPRYTAYGQTESGRPGTEDEE AQMIRTWRRAYQGTLMCSGGFTRELGIQAVAEGDADLVSYGRLFISNPDLVLRLKVDAPLNKYIRKTFYSQDPVVGYTDYPFLSKANGGQAPLSRL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Potri.006G142800 [exp]	0	1
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Potri.012G062700 [exp]	4.79	0.8162
AT1G29690		CAD1	constitutively activated cell ...		Potri.016G135100 [exp]	15.09	0.7738
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.019G057300 [exp]	29.39	0.8001	Pt-MSD1.1
AT2G28060			5'-AMP-activated protein kinas...		Potri.009G008700 [exp]	30.74	0.7370
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Potri.010G190400 [exp]	34.17	0.8040
AT3G62220			Protein kinase superfamily pro...		Potri.014G114200 [exp]	36.33	0.7832
AT5G55070			Dihydrolipoamide succinyltrans...		Potri.011G089200 [exp]	36.81	0.8014
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Potri.011G110900 [exp]	38.97	0.8013	Pt-GF14.3
AT5G13420			Aldolase-type TIM barrel famil...		Potri.001G068200 [exp]	57.31	0.7314
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Potri.010G203500 [exp]	60.44	0.7853	Pt-CTIMC.2

Compare expression of checked genes

Potri.006G142800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.