Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35560 880 / 0 DENN (AEX-3) domain-containing protein (.1) AT2G20320 307 / 3e-90 DENN (AEX-3) domain-containing protein (.1) AT1G49040 49 / 1e-05 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255500 [exp] 306 / 2e-91 AT2G20320 906 / 0.0 DENN (AEX-3) domain-containing protein (.1) Potri.012G060800 [exp] 53 / 8e-07 AT1G49040 1782 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.015G049500 [exp] 51 / 5e-06 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.018G065501 [exp] 0 / 1 AT5G35560 0 / 1 DENN (AEX-3) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033443 [exp] 835 / 0 AT5G35560 856 / 0.0 DENN (AEX-3) domain-containing protein (.1) Lus10017173 [exp] 462 / 8e-155 AT5G35560 456 / 2e-153 DENN (AEX-3) domain-containing protein (.1) Lus10000499 [exp] 297 / 3e-88 AT2G20320 918 / 0.0 DENN (AEX-3) domain-containing protein (.1) Lus10022854 [exp] 269 / 4e-78 AT2G20320 852 / 0.0 DENN (AEX-3) domain-containing protein (.1) Lus10023563 [exp] 50 / 7e-06 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10040449 [exp] 50 / 1e-05 AT1G49040 1816 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0330 [poplar] [flax] AVL9 PF02141 [poplar] [flax] DENN DENN (AEX-3) domain
Representative CDS sequence Show only first row Show all	>Potri.006G143000.4 pacid=42768960 polypeptide=Potri.006G143000.4.p locus=Potri.006G143000 ID=Potri.006G143000.4.v4.1 annot-version=v4.1 ATGGCGAAGAATGAAGACACTGGCAGTCCTGGTTGGAGGACTTCATTGTTTTTGCAGACAACAGAAGATGTTGCGAAAGCTGTTGCAGACGCAGCCACCA CTGTGCCATCGCCAAGGCCATCTGTGGTATTTTCATCCAAGGATGATCATGGTGATAGCCAATTCCAGAAGCTACAGCGCCATTTTAGCAGAATGCTAAA AGGGTTTTCTTCTCCTCCGCCAGAAGTGAAAAGTGGAACTTATAATCCAGAAGTTCTTACTAGCCAAAAACGTCAGTGGGCAAAATTTCAGTTACAGTAC TTGGACCATAGGCCTTTAAAGGCGCCATCGAGGCTTATAGAGAGCATGGTAGTTGTTGGACTTCACCCTAATTGTGATCTTCAAGCACTCCAGAGGCAAT ATGGTCCCAGAAAGTCCGAAGGTTCTGGGATATTGCAAGGTGCACTTGGTTGTCAAAATCAGTCACGTATAGAACCCATTCTTGAGCCCCAGGTTTTGTT TGTTTATCCTCCAGAAAAACAGCTGCCACTTAAATACAAAGATCTTGTATCATTTTGCTTCCCTGGAGGCCTGGAGGTTCATGCAGTTGAGAGAACTCCT TCCATGAGCGAGTTGAATGAAATTCTTCTTGGGCAGGAGCACCTTAAACAAAGTGACCTGTCATTTGTATTTCGATTACAGGTTGCTGATGATTCAACAT TGTATGGGTGTTGTGTGTTAGTTGAAGAAATTGTGCAAAAACCCTCTGGATTGCTTTCCATGGTTTCAGATAAACAGTCTTCCCGCTCATCTTTGAGCCG TTACATGCTCACCACGTACAGATGTTACTGCATTCTCTCAAGGCTTCCATTTTTTGAATTACATTTTGGTTTATTGAGCAGCATCTTCACAGAAGAAAGG TTGGAGCGATTAACAAAAAATATAGGCTTTTTAGACTTGGAAGAAGATTTAGGTGACAATTTAGATGGTGTATCAACGAATTATAGAGCTGCAGAGGACA TACCAGATGGAACGACAGAAATATCCCAATCCAGCTTAAGGGATTCTACACCTGGAGGTTTTGATGATGAAAAGAGTAACGTGGAGCCTCAAATTCTTGA GGAGCATATTCATTCTTTGAAGAAAGGTGTCAATGATGATGCTGTTCCTATTTATTCTGAAAACGAGATGGTTTCAGCCAAAGGTGAACCTGGTAGAGTA AACTTAGAAGATTGTGATGTTGATGATTCTCCATCGAACAAGCAAGCACAAGAAAGACGATTACCAAATGCTATTCGGCCACTCCTCCGCCATTGTCAGT ATGAAAGCTCTGAATCTTCCTCCAGCTTCCAGGGTTCTCCCAGTGAGGATAGAAACTTTAGGAGTGATGTTGATGATATGGAGACCGAAGAGGCATCTTT TTCTGGGCAAGAAGATTCCAGTGATCACATTGATATTCTGGAATGGGCTAAGGCAAACAATCATGGATCATTGCAGTTACTGTGTGAATATTACCGGCTG CATTGCCCTGCTAGGGGTTCCACTCTTAGATTTCAGCCTTTGGAGCATCTTCATCCCTTAGAATATCGTAGACCTGATGAAGCTGTTTTACATGTTAATG GCTCAACTATTGATTTGAGATCATGCATCACAAGTCTGGAGTTTGCAGAGGCACGCAGTGCACTCTCTGCAGAGGAAGAAGCCACTGCATTATCAACTTG GGCCATTTCATGCATATGCGGATCCTTGCGACTTGAGCATATCTTGACAATGTTTGCGGGAGCCCTGCTAGAGAAGCAGATTGTGGTTGTGTGTTCTAAT TTGGGAATCTTGTCTGCTTCAGTTTTGTCAATTGTCCCTCTCATTCGTCCCTATCGGTGGCAAAGCTTGTTAATGCCAATTTTACCAGATGACATGCTGG AGTTTTTGGATGCTCCTGTTCCATACATTGTGAGTATACAGATTCCAGCCACATTATCCTCAAGTGCTAGATTTCTATTTCCTTGGAATGAACTGCCTGT GTTATGTGGATTCTGCATTTCTTATGTTGGTGTTAAGAACAAAACCAGTGAAGTACAATCAAAATTAAGCAACGTCATTTTGGTTGATGCTAACAAGAAC CAGGTGAAGTCACCAGCGATACCACAACTGCCAAAACACAGGGAGCTGTTATCATCCCTAAGTCCTTATCATTCTAAGCTTGTTGGAGAAAGCTATTTGG CCAGAAAGAGGCCAGTGTATGAGTGTACAGATGTGCAGGTTGAGGCTGCCAAGGGTTTTCTAGGGGTTTTAAGATCTTACTTGGATTCGCTTTGCTCTAA CCTGCGTTCTCATACAATAACAAATGTACAATCCAATAATGACAAGGTATCATTGCTCTTAAAGGAGAGTTTCATAGATTCGTTCCTTAGTCGTGATCGA CCATTTATGAAGCTTTTCGTGGATACACAGCTCTTCTCTGTACATACAGATCTTGTTCTTTCGTTTTTCCAGAAGGAATAG
AA sequence Show only first row Show all	>Potri.006G143000.4 pacid=42768960 polypeptide=Potri.006G143000.4.p locus=Potri.006G143000 ID=Potri.006G143000.4.v4.1 annot-version=v4.1 MAKNEDTGSPGWRTSLFLQTTEDVAKAVADAATTVPSPRPSVVFSSKDDHGDSQFQKLQRHFSRMLKGFSSPPPEVKSGTYNPEVLTSQKRQWAKFQLQY LDHRPLKAPSRLIESMVVVGLHPNCDLQALQRQYGPRKSEGSGILQGALGCQNQSRIEPILEPQVLFVYPPEKQLPLKYKDLVSFCFPGGLEVHAVERTP SMSELNEILLGQEHLKQSDLSFVFRLQVADDSTLYGCCVLVEEIVQKPSGLLSMVSDKQSSRSSLSRYMLTTYRCYCILSRLPFFELHFGLLSSIFTEER LERLTKNIGFLDLEEDLGDNLDGVSTNYRAAEDIPDGTTEISQSSLRDSTPGGFDDEKSNVEPQILEEHIHSLKKGVNDDAVPIYSENEMVSAKGEPGRV NLEDCDVDDSPSNKQAQERRLPNAIRPLLRHCQYESSESSSSFQGSPSEDRNFRSDVDDMETEEASFSGQEDSSDHIDILEWAKANNHGSLQLLCEYYRL HCPARGSTLRFQPLEHLHPLEYRRPDEAVLHVNGSTIDLRSCITSLEFAEARSALSAEEEATALSTWAISCICGSLRLEHILTMFAGALLEKQIVVVCSN LGILSASVLSIVPLIRPYRWQSLLMPILPDDMLEFLDAPVPYIVSIQIPATLSSSARFLFPWNELPVLCGFCISYVGVKNKTSEVQSKLSNVILVDANKN QVKSPAIPQLPKHRELLSSLSPYHSKLVGESYLARKRPVYECTDVQVEAAKGFLGVLRSYLDSLCSNLRSHTITNVQSNNDKVSLLLKESFIDSFLSRDR PFMKLFVDTQLFSVHTDLVLSFFQKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35560			DENN (AEX-3) domain-containing...		Potri.006G143000 [exp]	0	1
AT5G13660			unknown protein		Potri.006G082800 [exp]	2.23	0.8904
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.010G154000 [exp]	2.44	0.8720	Pt-SPL1.4
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.015G084000 [exp]	4.47	0.8675
AT1G19010			unknown protein		Potri.001G350000 [exp]	5.09	0.8499
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.005G222800 [exp]	5.47	0.8612	APG9.2
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Potri.012G136100 [exp]	5.47	0.8554
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.012G088200 [exp]	6.92	0.8537
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.003G086400 [exp]	8.48	0.8717
AT2G14520			CBS domain-containing protein ...		Potri.009G082300 [exp]	9.38	0.8210
AT3G62010			unknown protein		Potri.002G184400 [exp]	12.40	0.8553

Compare expression of checked genes

Potri.006G143000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.