Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13960 189 / 4e-56 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G06200 160 / 5e-47 GRF ATGRF6 growth-regulating factor 6 (.1) AT4G37740 149 / 4e-40 GRF ATGRF2 growth-regulating factor 2 (.1) AT2G22840 132 / 6e-34 GRF ATGRF1 growth-regulating factor 1 (.1) AT2G36400 129 / 1e-33 GRF ATGRF3 growth-regulating factor 3 (.1) AT3G52910 122 / 5e-31 GRF ATGRF4 growth-regulating factor 4 (.1) AT5G53660 112 / 8e-28 GRF ATGRF7 growth-regulating factor 7 (.1) AT4G24150 101 / 2e-23 GRF ATGRF8 growth-regulating factor 8 (.1) AT2G45480 76 / 6e-15 GRF ATGRF9 growth-regulating factor 9 (.1) AT1G09060 44 / 0.0001 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G065400 [exp] 530 / 0 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.001G169100 [exp] 239 / 3e-76 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.003G065000 [exp] 234 / 5e-74 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1) Potri.013G077500 [exp] 176 / 1e-51 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 173 / 7e-51 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1) Potri.001G132600 [exp] 154 / 3e-43 AT4G37740 142 / 6e-38 growth-regulating factor 2 (.1) Potri.002G115100 [exp] 157 / 1e-42 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1) Potri.014G012800 [exp] 155 / 5e-42 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1) Potri.007G007100 [exp] 140 / 1e-36 AT2G22840 325 / 6e-104 growth-regulating factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000473 [exp] 281 / 2e-91 AT3G13960 187 / 5e-55 growth-regulating factor 5 (.1) Lus10033441 [exp] 280 / 6e-91 AT3G13960 191 / 3e-56 growth-regulating factor 5 (.1) Lus10020352 [exp] 167 / 1e-48 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10009533 [exp] 166 / 2e-46 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10037668 [exp] 159 / 2e-46 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1) Lus10004455 [exp] 161 / 6e-46 AT3G13960 150 / 8e-42 growth-regulating factor 5 (.1) Lus10015651 [exp] 154 / 2e-44 AT3G13960 155 / 5e-45 growth-regulating factor 5 (.1) Lus10019274 [exp] 141 / 2e-37 AT2G22840 261 / 4e-81 growth-regulating factor 1 (.1) Lus10011558 [exp] 140 / 6e-37 AT2G22840 268 / 2e-83 growth-regulating factor 1 (.1) Lus10011559 [exp] 136 / 1e-35 AT2G22840 290 / 3e-92 growth-regulating factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [poplar] [flax] WRC WRC
Representative CDS sequence Show only first row Show all	>Potri.006G143200.1 pacid=42768050 polypeptide=Potri.006G143200.1.p locus=Potri.006G143200 ID=Potri.006G143200.1.v4.1 annot-version=v4.1 ATGATAATGAGTGGAGGAAACAGGTTTCCCTTCACTGCATCCCAGTGGCAAGAGCTTGAGCATCAAGCCCTAATCTACAAGTACATGGTTTCAGGCATCC CCATCCCTCCCGATCTTCTTTTCACCATCAAAAGAAGTGGCTGCTTGGACTCTTCACTCTCTTCAAAGCTCTTTCCTTGCCAACCTCCACATTTTTCCTG GGGCTGTTTTCAGATGGGTTTGGGAAGGAAAATAGATCCAGAACCGGGGAGGTGCAGGAGAACTGATGGAAAGAAATGGAGATGCTCAAAAGAAGCATAC CCAGATTCTAAGTACTGTGAGAAACATATGCATAGAGGGAAGAACCGTTCAAGAAAGCCTGTGGAAGTTGCAACACAATCAATAACAGCACCAACTGTCT CATCAATGACCAGAAACCACTCTAATAATTCACTACTAACAACATCCCCCACCTCTCTTTCGTTATTGTCACCTAAGACCCACCACCAGAATCACCTTCA CTATCCTGCTCCTGCAGGTTATCATGCCCATCCAAATCATCAATTCTTGTCTTCTTCCAGACCCCTTGGGATTGGTCTGTCCCCTCATGAAAATCCTACT CACTTGCTTTTGGACTCTGGTGGTTCTTCTCTGGCCAATACAGATTACAGAAACAGGAATGTTTATGGGCTGAAAGAGGAGGTTGATGAGCATGCTTTCT TCTCAGAACCTTCAGGTTCTATGAGAAGCTTGTCCGGTTCATCTTTGGATGATGCTTGGCAACTCACCCCACTCACAATGAACTCTTCTCCTTCTACCAC CAACTCTTCAAAGCAAAGGAGCTTGTCTAGTTTACACAACGAATATTCTTACTTGCAGCTTCAAAGCCTGAGTGATCCCGATACCCCAAAACAACAAAAG CAGTGTCAACATAACTATCTTCTGGGAAGTAGTGATGTAGACAGTCTAGGGCCCATAAAAATGGAGAAGGAAAAATCCCAAAAGACTGTTCACCGTTTCT TTGATGAATGGCCACCAAAGGATAAAGATTCATGGCTTGATTTGGATGACAAATCATCAAAAAGTGCATCAGTTTCAGCAACCGGACTCTCAATATCCAT TCCCTCCTCTCATGACTTTCTTCCAATCTTCAGTTCAAGAACTAATAATGGTGGTTGA
AA sequence Show only first row Show all	>Potri.006G143200.1 pacid=42768050 polypeptide=Potri.006G143200.1.p locus=Potri.006G143200 ID=Potri.006G143200.1.v4.1 annot-version=v4.1 MIMSGGNRFPFTASQWQELEHQALIYKYMVSGIPIPPDLLFTIKRSGCLDSSLSSKLFPCQPPHFSWGCFQMGLGRKIDPEPGRCRRTDGKKWRCSKEAY PDSKYCEKHMHRGKNRSRKPVEVATQSITAPTVSSMTRNHSNNSLLTTSPTSLSLLSPKTHHQNHLHYPAPAGYHAHPNHQFLSSSRPLGIGLSPHENPT HLLLDSGGSSLANTDYRNRNVYGLKEEVDEHAFFSEPSGSMRSLSGSSLDDAWQLTPLTMNSSPSTTNSSKQRSLSSLHNEYSYLQLQSLSDPDTPKQQK QCQHNYLLGSSDVDSLGPIKMEKEKSQKTVHRFFDEWPPKDKDSWLDLDDKSSKSASVSATGLSISIPSSHDFLPIFSSRTNNGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.006G143200 [exp]	0	1
AT4G31980			unknown protein		Potri.003G209300 [exp]	15.09	0.8446
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.007G123200 [exp]	18.76	0.8264
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Potri.007G132000 [exp]	22.44	0.8294
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.015G031600 [exp]	24.41	0.8386
AT2G14830			Regulator of Vps4 activity in ...		Potri.004G038600 [exp]	26.60	0.8158
AT1G73890			Bifunctional inhibitor/lipid-t...		Potri.015G054000 [exp]	27.47	0.7428
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Potri.001G098000 [exp]	29.49	0.8161
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Potri.007G017000 [exp]	35.32	0.7558
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Potri.013G134400 [exp]	36.66	0.8153
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128300 [exp]	44.09	0.8145

Compare expression of checked genes

Potri.006G143200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.