Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PAFC901
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06210 1506 / 0 VIP6, ELF8 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1) AT3G04240 63 / 1e-09 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 50 / 7e-06 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G30610 45 / 0.0004 EMB88, EMB2279 EMBRYO DEFECTIVE 88, EMBRYO DEFECTIVE 2279, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT5G17270 44 / 0.0005 Protein prenylyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G064900 [exp] 107 / 2e-27 ND / Potri.013G051400 [exp] 58 / 3e-08 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G025600 [exp] 56 / 1e-07 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 54 / 5e-07 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G080800 [exp] 52 / 2e-06 AT5G17270 909 / 0.0 Protein prenylyltransferase superfamily protein (.1) Potri.016G075700 [exp] 50 / 8e-06 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033440 [exp] 1532 / 0 AT2G06210 1499 / 0.0 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1) Lus10000471 [exp] 1382 / 0 AT2G06210 1293 / 0.0 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1) Lus10000472 [exp] 160 / 6e-44 AT2G06210 212 / 2e-62 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1) Lus10003576 [exp] 61 / 7e-09 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 56 / 3e-07 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 54 / 5e-07 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021336 [exp] 52 / 2e-06 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 49 / 4e-05 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10043031 [exp] 48 / 4e-05 AT5G48390 726 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011130 [exp] 46 / 0.0002 AT5G48390 1125 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13181 [poplar] [flax] TPR_8 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat CL0020 [poplar] [flax] TPR PF13424 [poplar] [flax] TPR_12 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.006G143300.1 pacid=42767635 polypeptide=Potri.006G143300.1.p locus=Potri.006G143300 ID=Potri.006G143300.1.v4.1 annot-version=v4.1 ATGGCGTTTGTGTACATACCGGTGCAGAACTCGGAGGAAGAAGTTAGGGTAGCTCTAGATCAGCTTCCTAGGGACGCCTCTGATATTCTTGATATCCTCA AAGCCGAGCAAGCTCCTCTCGATCTCTGGCTCATCATCGCCAGAGAGTATTTCAAGCAAGGAAAACTCGATCAATTTCGGCAGATATTAGAAGAAGGATC CAGTCATGAAATTGATGAATATTATGCGGATGTTAGATATGAGAGGATTGCTATCCTCAATGCTTTGGGGGCTTATTATAGCTATCTTGGAAAAGTCGAG ACAAAACAAAGAGAGAAGGAGGAGTATTTTATACAGGCTACCAAACATTACAATAAAGCTTCCAGGATTGACATGCACGAGCCTTCTACTTGGGTTGGCA AAGGTCAGCTTTTACTGGCTAAGGGTGAAGTAGAACAAGCATCTGCTGCGTTTAGGATCGTACTGGAAGGAGACCGTGATAATGTATCTGCTCTTCTCGG TCAGGCGTGTGTTGAGTACAGTCGTGGACATTATGGTGAATCGTTGACCTTGTTTAAGCGGGCCTTGCAAGTTTATCCTGATTGTCCTGGAGCTGTAAGA CTTGGCATAGGACACTGCCATTATAAGCTGGGCCACGTGGGAAAAGCTTGCCTGGCTTTTCAGAGGGTTTTGCAGTTGGATCCAGAAAATGTTGAGGCTC TTGTTTCACTAGCAATTTTGGATTTGCAAACAAATGAAGCTGCTGCAATAAGGAAAGGAATGGAAAAAATGCAGAGAGCTTTTGAGATATACCCCTATTG TGCAATGGCACTGAATTATCTAGCAAATCACTTTTTCTTCACCGGTCAACATTTTTTAGTTGAGCAACTGACTGAAACTGCACTTGCTGTCACAAATCAT GGACCAACAAAGTCACATTCTTATTACAATTTAGCTCGCTCTTACCATAGCAAGGGTGATTATGAAACAGCTTCAAGATACTACTGGGCATCAGTCAAGG AAATCAATAAGCCCAGTGAATTTGTGTTTCCTTATTATGGTTTGGGGCAGGTACAATTGAAACTGGGAGAGATTAAAAATGCGTTGTCAAATTTTGAAAA AGTTTTGGAGGTTTACCCTGATAACTGTGAGACATTAAAGGTTCTTGGGCACATATATGTTCAGCTTGGGCAAACTGAAAAGGCTCAGGAATTTTTGAGA AAGGCTGCAAAAATTGATCCTCGTGATGCCCAGGCGTTTCTTGATCTGGGAGAATTGTTAATTTCAACTGACACTGGAGCTGCTCTTGATGCCTTCAAAA CTGCGCGCAGTCTTCTGAAAAAGGGAGGTGAAGAAGTGCCAATAGAAGTGCTTAACAATATTGCAGTCATTCATTTTGAAAGAGAAGAACTTGAGCTTGC TTTGCAAAATTTCAAAGAGGCTCTAGGTGATGGCATATGGCTCACTTTTCTTGAAGGCAAAGCAAATACATATGAAGTTGATGCAACTTCATCTCTTCTT CAATACAAGGACATGCAGATATTTCGTCGACTGGAGGAGGAAGGTCATTCTGTGGAACTGTCTTGGAATAAAGTCACAACATTATTTAACTTGGCCAGAT TACTTGAGCAGTTGCATAACACAGAAACTGCAAGCACATTATACCGCCTCATCTTGTTTAAGTATCCAGACTATGTGGATGCTTATCTGAGGCTTGCTGC CATTGCCAAAGCTCGAAACAATCTTCCATTAAGCATCGAACTGGTAAATGAGGCTCTGACTGTGAATGACAAGTGTCCAAATGCATTATCAATGCTTGGT GACCTGGAGCTTAAAAATGATGACTGGGTAAAGGCTAAAGAAACATTCCGTGCTGCTAGTGAGGCAACTGATGGGAAGGATTCTTATGCAACTCTCTCTT TGGGGAACTGGAACTACTTCGCTGCAATACGTAATGAGAAAAGAAATCCAAAGTTGGAAGCTACCCATTTGGAAAAAGCCAAGGAACTGTACACCAGAGT TCTGGTTCAGCATACAGCTAATCTTTATGCTGCCAATGGTGCTGGAGTAGTCTTGGCAGAAAAAGGACACTTTGATGTATCAAAAGATCTTTTTACACAG GTCCAAGAAGCTGCAAGTGGAAGCATTTTTGTCCAGATGCCAGATGTCTGGATAAATTTGGCACATGTATATTTTGCTCAAGGAAATTTTGCATTAGCTG TGAAGATGTACCAGAATTGTTTGCAGAAATTCTTTTATAATACAGATTCTCAGATTCTTCTTTATTTGGCGCGCACTCATTATGAAGCTGAACAGTGGCA GGACTGCAAGAGAACTTTATTGAGAGCCATCCATTTGACACCTTCTAATTACACACTGAGGTTCGATGCAGGTGTTGCAATGCAAAAATTCTCAGCATCT ACACTACAAAAGACAAAGAGGACAGTAGATGAGGTGCGTTCAACTGTTGATGAGCTGGAAAATGCTGTCCGTTTATTTAGTCAGTTATCTGCTGCTTCCA ACCTGTACTTTAATGGGTTTGATGAGAAGAAAATCAACACCCATGTTGAGTATTGCAAACATTTACTAGAGGCTGCTATAGTTCATCGTGAAGCAGCTGA GCGCGAGGAACAGCAAAACCGACAGAGACTAGATCTTGCTCGTCAGATGGCATTGGCAGAGGAAGCCCGCCGCAAGGCTGAAGAACAAAGGAAATTTCAG TTAGAGAGGAGAAAACAGGAGGATGAATTAAAACGGGTGCGGCAACAAGAAGAGCATTTTGAGCGTGTGAAGGAGCAATGGAAGAGCAGCACATCTGCTT CTAAGCGGAGGGACAGGGCAGATATTGATGATGGTGAGGGTGGGCACGGTGAGAAAAGGAGGAGAAAGGGTGGAAAGAGGAGAAAGAAGGAGAAGAGCTC AAGGTCACGCTATGAGATGGAAGAAGCTGACATGATGGATGATCATGATGAACCAGAAGATGATGATGCCAACGTGAATTTTAGGGAGCCTGGATATCAA ATGAATGATCAGGATGACAATGCAGAAGAGAATGCGCAGGATGTTCTTGCAGCAGCTGGGCTGGAAGACTCTGATGCAGATGATGATGCGGCTGCACCTT CATCAGCAGGCAGGAGGAAGCGGGCATGGTCAGAATCTGACGAGGATGAGATTTCAGAGAGGAAGCCACAGTCGAGCCTTTTGCGAGAGAATTCTGCTGA TCTGCAGGATAGTGATGGTGAATTTAGAGACAAGAGGCAGGAGAATGCTGCTGTTGATGATGAGGATTGA
AA sequence Show only first row Show all	>Potri.006G143300.1 pacid=42767635 polypeptide=Potri.006G143300.1.p locus=Potri.006G143300 ID=Potri.006G143300.1.v4.1 annot-version=v4.1 MAFVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLDQFRQILEEGSSHEIDEYYADVRYERIAILNALGAYYSYLGKVE TKQREKEEYFIQATKHYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFRIVLEGDRDNVSALLGQACVEYSRGHYGESLTLFKRALQVYPDCPGAVR LGIGHCHYKLGHVGKACLAFQRVLQLDPENVEALVSLAILDLQTNEAAAIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH GPTKSHSYYNLARSYHSKGDYETASRYYWASVKEINKPSEFVFPYYGLGQVQLKLGEIKNALSNFEKVLEVYPDNCETLKVLGHIYVQLGQTEKAQEFLR KAAKIDPRDAQAFLDLGELLISTDTGAALDAFKTARSLLKKGGEEVPIEVLNNIAVIHFEREELELALQNFKEALGDGIWLTFLEGKANTYEVDATSSLL QYKDMQIFRRLEEEGHSVELSWNKVTTLFNLARLLEQLHNTETASTLYRLILFKYPDYVDAYLRLAAIAKARNNLPLSIELVNEALTVNDKCPNALSMLG DLELKNDDWVKAKETFRAASEATDGKDSYATLSLGNWNYFAAIRNEKRNPKLEATHLEKAKELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFTQ VQEAASGSIFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLQKFFYNTDSQILLYLARTHYEAEQWQDCKRTLLRAIHLTPSNYTLRFDAGVAMQKFSAS TLQKTKRTVDEVRSTVDELENAVRLFSQLSAASNLYFNGFDEKKINTHVEYCKHLLEAAIVHREAAEREEQQNRQRLDLARQMALAEEARRKAEEQRKFQ LERRKQEDELKRVRQQEEHFERVKEQWKSSTSASKRRDRADIDDGEGGHGEKRRRKGGKRRKKEKSSRSRYEMEEADMMDDHDEPEDDDANVNFREPGYQ MNDQDDNAEENAQDVLAAAGLEDSDADDDAAAPSSAGRRKRAWSESDEDEISERKPQSSLLRENSADLQDSDGEFRDKRQENAAVDDED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Potri.006G143300 [exp]	0	1	PAFC901
AT5G25060			RNA recognition motif (RRM)-co...		Potri.018G017200 [exp]	1.41	0.8804
AT3G09850			D111/G-patch domain-containing...		Potri.006G189501 [exp]	2.82	0.8791
AT2G39260			binding;RNA binding (.1)		Potri.010G216100 [exp]	3.00	0.8729
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.003G110300 [exp]	4.24	0.8581
AT2G25760			Protein kinase family protein ...		Potri.003G049700 [exp]	6.16	0.8207
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Potri.006G047700 [exp]	7.48	0.8547
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Potri.012G034300 [exp]	8.48	0.8479
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072900 [exp]	11.22	0.8561
AT1G65440		GTB1	global transcription factor gr...		Potri.006G031900 [exp]	12.00	0.8523
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.008G195900 [exp]	12.16	0.8673

Compare expression of checked genes

Potri.006G143300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.