Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28230 356 / 3e-126 TATA-binding related factor (TRF) of subunit 20 of Mediator complex (.1) AT4G09070 324 / 1e-113 TATA-binding related factor (TRF) of subunit 20 of Mediator complex (.1) AT2G28020 82 / 1e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G126902 [exp] 140 / 2e-43 AT2G28230 87 / 9e-23 TATA-binding related factor (TRF) of subunit 20 of Mediator complex (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030830 [exp] 339 / 1e-116 AT2G28230 305 / 4e-103 TATA-binding related factor (TRF) of subunit 20 of Mediator complex (.1) Lus10030654 [exp] 261 / 2e-89 AT2G28230 234 / 2e-79 TATA-binding related factor (TRF) of subunit 20 of Mediator complex (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0273 [poplar] [flax] CYTH PF08612 [poplar] [flax] Med20 TATA-binding related factor (TRF) of subunit 20 of Mediator complex
Representative CDS sequence Show only first row Show all	>Potri.006G143400.2 pacid=42767872 polypeptide=Potri.006G143400.2.p locus=Potri.006G143400 ID=Potri.006G143400.2.v4.1 annot-version=v4.1 ATGCCACTCAAATGGGTTTTGCATTGGCAACCCAACGCAGGAACAACCGTGAACACCCAAATCCTCAATGAAGTAACTCAGTGCGTGGAGAGCATTAACG GCGTTAAAGAAGGCCGATGGAAAGCTACTGTCACCTACTATAAACCCATACTACGAGACCAATCGCAAGCTCCTGAATTGCCGCGAGATTTCTTGGGTAT TTCTTTGCCAGAGCAGCCAAATAAGTATTACTTCATAATCCGAGGTCAAAGGATTGTTCTCGAGGCAGATTCCTCCATTCAAACAATAATGGAGAAGCTT CAGTCTTATAAGTCGAGGGTTGCTCTTTACTTTGAGGGTTTTCAGTATCAACTCGGGGACTTTCAGTTGCGAGTTGGGAAAGTTACCCCAACTCATTCCG ACAACTTGAGAGGAATTATTATGGAGGTGGAGTATCTTCCTTTGTCATCAATTGACAAATCCAGGCAAGTCATGGAAGAGTTTGTTGATATATGGCAAGA AGCCATCTCAAAAAGATCATTACCAGGCCATTTCATGCATATGGAACCAAACTTCGTTGAGTACGGTCTCTCTGATCACTATAGCTCGCAACACACAGCT GTGCAGTATGCTACTGTCATGGCTCAACTAATTGCGACTCAGTCAGTGCAAGCCGCGAGAAACTAG
AA sequence Show only first row Show all	>Potri.006G143400.2 pacid=42767872 polypeptide=Potri.006G143400.2.p locus=Potri.006G143400 ID=Potri.006G143400.2.v4.1 annot-version=v4.1 MPLKWVLHWQPNAGTTVNTQILNEVTQCVESINGVKEGRWKATVTYYKPILRDQSQAPELPRDFLGISLPEQPNKYYFIIRGQRIVLEADSSIQTIMEKL QSYKSRVALYFEGFQYQLGDFQLRVGKVTPTHSDNLRGIIMEVEYLPLSSIDKSRQVMEEFVDIWQEAISKRSLPGHFMHMEPNFVEYGLSDHYSSQHTA VQYATVMAQLIATQSVQAARN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28230			TATA-binding related factor (T...		Potri.006G143400 [exp]	0	1
AT4G21570			Protein of unknown function (D...		Potri.001G405700 [exp]	2.44	0.8333
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G116900 [exp]	4.58	0.8106
AT2G34585			unknown protein		Potri.011G084300 [exp]	5.47	0.7672
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G113466 [exp]	8.48	0.7980
					Potri.016G028800 [exp]	11.95	0.7848
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014382 [exp]	13.26	0.7770
AT5G54930			AT hook motif-containing prote...		Potri.001G422966 [exp]	13.96	0.7944
AT2G46420			Plant protein 1589 of unknown ...		Potri.012G001700 [exp]	16.61	0.7691
AT2G42120		POLD2	DNA polymerase delta small sub...		Potri.016G045800 [exp]	21.21	0.7884
					Potri.001G236533 [exp]	24.00	0.7407

Compare expression of checked genes

Potri.006G143400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.