Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09380 231 / 2e-75 RNA polymerase III RPC4 (.1) AT4G25180 160 / 2e-47 RNA polymerase III RPC4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G126700 [exp] 585 / 0 AT5G09380 226 / 2e-73 RNA polymerase III RPC4 (.1) Potri.003G107300 [exp] 209 / 6e-66 AT4G25180 192 / 4e-59 RNA polymerase III RPC4 (.1) Potri.005G126802 [exp] 122 / 2e-35 AT5G09380 52 / 2e-09 RNA polymerase III RPC4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019022 [exp] 254 / 1e-83 AT5G09380 191 / 4e-59 RNA polymerase III RPC4 (.1) Lus10009019 [exp] 175 / 5e-53 AT4G25180 174 / 2e-52 RNA polymerase III RPC4 (.1) Lus10009655 [exp] 157 / 6e-46 AT4G25180 169 / 2e-50 RNA polymerase III RPC4 (.1) Lus10000362 [exp] 134 / 1e-37 AT4G25180 69 / 1e-13 RNA polymerase III RPC4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0662 [poplar] [flax] Triple_barrel PF05132 [poplar] [flax] RNA_pol_Rpc4 RNA polymerase III RPC4
Representative CDS sequence Show only first row Show all	>Potri.006G143500.1 pacid=42767508 polypeptide=Potri.006G143500.1.p locus=Potri.006G143500 ID=Potri.006G143500.1.v4.1 annot-version=v4.1 ATGGAGTCCAAACCTCCACAAGATGCCCAGAGGAAGTATAGGTTTATGCCTAAAGCTCCTCCACGCCGAGTTCCAAAGCCGGAAGTTAAAACTGAAAAGG TGGAGAATGTGGATACTCTACAGGCCATGAACTTGATGAAGCAATTCCAGGAAAGGTCCCTAAAGCAAAAGATTACAAACGAAAAGAAAGTGCAGAAACT TGACATTGCATTTGGTCCTGGAGCTGCTGCAACGAAGCCCTTTCCAAGCTGGAGTACAATTAACAGAGATCAGGGTTCATCTTCCAATGGTAATGCCGAT GCTCCAGGCCCGAGAGAGAAAGAATACATTGAACCATGGGATTATTACAGTAATTATCCCGTGAGTCTTCCTATGAGGAGGCCATATTCAGGAAATTCAG CAATTCTTGACGAAGAGGAATTTGGGGAGGTGTCCGAAGCTGCAACATACGATGAAAATTCAACAAATTCTGCGGTGGAGCTTGGTTTGATGGAGGAAAA TGTTGAAGCAAGTATGCTCTTTGTTCAGTTACCACCAACTATGCCCATGATAAAGCGATCAGCTACAGCAGTTGGCCCTGAGGTTAAGGAAAGCTCTAGG CCATCAGGAGGTGCACGTGCAATTGAGAAGACTTGCAGATTAGATGAGTTACCAGCGGGCTACATGGGTAAAGTGCTAGTGTACAGGAGTGGTGCTGTTA AGCTGAAGCTTGGGGATACCCTTTATGATGTCTCCCCAGGTATGAATTCTATATTTGCTCAAGATGTTGTAGCTATTAATAGAGGAGAGGAAACTTGTTG TGTGGTAGCGGAGATTGAGAAGCGTGTTACACTAATCCCTGATGTGGATGCCATTATAAGTAGAGTAGCAGAAATGTGA
AA sequence Show only first row Show all	>Potri.006G143500.1 pacid=42767508 polypeptide=Potri.006G143500.1.p locus=Potri.006G143500 ID=Potri.006G143500.1.v4.1 annot-version=v4.1 MESKPPQDAQRKYRFMPKAPPRRVPKPEVKTEKVENVDTLQAMNLMKQFQERSLKQKITNEKKVQKLDIAFGPGAAATKPFPSWSTINRDQGSSSNGNAD APGPREKEYIEPWDYYSNYPVSLPMRRPYSGNSAILDEEEFGEVSEAATYDENSTNSAVELGLMEENVEASMLFVQLPPTMPMIKRSATAVGPEVKESSR PSGGARAIEKTCRLDELPAGYMGKVLVYRSGAVKLKLGDTLYDVSPGMNSIFAQDVVAINRGEETCCVVAEIEKRVTLIPDVDAIISRVAEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09380			RNA polymerase III RPC4 (.1)		Potri.006G143500 [exp]	0	1
AT5G09380			RNA polymerase III RPC4 (.1)		Potri.005G126700 [exp]	1.00	0.9532
AT2G16650		PRORP2	proteinaceous RNase P 2 (.1)		Potri.004G185200 [exp]	1.41	0.8991
AT5G06220			LETM1-like protein (.1.2)		Potri.001G187100 [exp]	4.47	0.8871
AT1G10417			unknown protein		Potri.008G190600 [exp]	5.47	0.8966
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Potri.018G009100 [exp]	6.92	0.8470	SRZ.4
AT2G41050			PQ-loop repeat family protein ...		Potri.016G023400 [exp]	11.83	0.8355
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Potri.007G000500 [exp]	13.96	0.8316
AT2G03670		CDC48B	cell division cycle 48B (.1)		Potri.001G128700 [exp]	14.69	0.8148	Pt-CDC48.1
					Potri.012G066225 [exp]	16.24	0.8716
AT1G34150			Pseudouridine synthase family ...		Potri.002G061650 [exp]	16.43	0.8722

Compare expression of checked genes

Potri.006G143500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.