Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06520 96 / 7e-27 PSBX photosystem II subunit X (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G065200 [exp] 149 / 2e-47 AT2G06520 100 / 1e-28 photosystem II subunit X (.1) Potri.006G222300 [exp] 117 / 4e-35 AT2G06520 80 / 2e-20 photosystem II subunit X (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033434 [exp] 105 / 2e-30 AT2G06520 93 / 1e-25 photosystem II subunit X (.1) Lus10025007 [exp] 47 / 1e-07 AT2G06520 72 / 3e-17 photosystem II subunit X (.1) Lus10026458 [exp] 44 / 3e-06 AT2G06520 74 / 3e-18 photosystem II subunit X (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06596 [poplar] [flax] PsbX Photosystem II reaction centre X protein (PsbX)
Representative CDS sequence Show only first row Show all	>Potri.006G144000.1 pacid=42768845 polypeptide=Potri.006G144000.1.p locus=Potri.006G144000 ID=Potri.006G144000.1.v4.1 annot-version=v4.1 ATGGCTTCAACTTCAGCTGTTTCAATGGCCTTGCCATTAACTTATGCAAGCCAAAAGAGGATTCCAGCCTCTGAGGCTTTCTTCAAGCCACTCCCAGCGA GGCCATCTAAGGCTATGTCAGCATCAAAATCCAGTGGTAGGTTTCAAGTCAAGGCTTCGTTGAAGGAGAAGTTGGTCACTGGATTGACAGCAGGTGCACT TACAGCTTCCATGGTGATTCCAGACGTAGCTGAAGCAGCTGGGGCTGGGGCTTCTCCTTCTCTCAAGAACTTCTTGCTCAGCATTGTGGCTGGTGGAGTT GTGCTTGTTGCCATTATTGGTGCAGTGATCGGAGTTTCCAATTTCGACCCTGTCAAGCGGGGTTAA
AA sequence Show only first row Show all	>Potri.006G144000.1 pacid=42768845 polypeptide=Potri.006G144000.1.p locus=Potri.006G144000 ID=Potri.006G144000.1.v4.1 annot-version=v4.1 MASTSAVSMALPLTYASQKRIPASEAFFKPLPARPSKAMSASKSSGRFQVKASLKEKLVTGLTAGALTASMVIPDVAEAAGAGASPSLKNFLLSIVAGGV VLVAIIGAVIGVSNFDPVKRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.006G144000 [exp]	0	1
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Potri.001G160400 [exp]	5.00	0.9833	ZIP4.2
AT2G12462			unknown protein		Potri.006G061400 [exp]	6.48	0.9827
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.011G067500 [exp]	8.48	0.9810	Pt-CIPK20.1
AT3G28040			Leucine-rich receptor-like pro...		Potri.014G147300 [exp]	10.39	0.9701
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G096200 [exp]	11.40	0.9796
AT3G02645			Plant protein of unknown funct...		Potri.003G205900 [exp]	13.56	0.9842
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Potri.016G135500 [exp]	14.28	0.9715
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Potri.016G051100 [exp]	14.42	0.9714
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.002G107800 [exp]	14.69	0.9750
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Potri.011G079500 [exp]	20.97	0.9728	Lhcb1-1,Pt-LHB1.2

Compare expression of checked genes

Potri.006G144000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.