Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12080 612 / 0 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 532 / 2e-179 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT3G14810 446 / 1e-144 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT1G78610 429 / 5e-138 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT1G53470 344 / 1e-105 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT2G17010 327 / 4e-100 Mechanosensitive ion channel family protein (.1) AT2G17000 314 / 8e-95 Mechanosensitive ion channel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G222500 [exp] 690 / 0 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 551 / 0 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 536 / 0 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.005G246600 [exp] 405 / 2e-129 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.001G384100 [exp] 322 / 3e-97 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.011G105500 [exp] 320 / 2e-96 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.004G178900 [exp] 318 / 8e-96 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006347 [exp] 775 / 0 AT5G12080 659 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10002960 [exp] 679 / 0 AT5G12080 605 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10027617 [exp] 608 / 0 AT5G12080 839 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10016423 [exp] 590 / 0 AT5G12080 786 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10019694 [exp] 576 / 0 AT5G12080 778 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10036587 [exp] 521 / 9e-176 AT5G12080 549 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10029701 [exp] 483 / 2e-160 AT5G12080 523 / 9e-177 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10036586 [exp] 409 / 4e-132 AT5G12080 573 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10004153 [exp] 395 / 7e-121 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10005556 [exp] 362 / 2e-115 AT1G53470 758 / 0.0 mechanosensitive channel of small conductance-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [poplar] [flax] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Potri.006G144100.1 pacid=42770223 polypeptide=Potri.006G144100.1.p locus=Potri.006G144100 ID=Potri.006G144100.1.v4.1 annot-version=v4.1 ATGGAAGCTGGCAAAGGAGTGATAGACAAGAAAGGAACAAATGACGTGGTGATTCACATTTCAACCACGAATCAAGATGCTACTACTAAAGCATACTCCT TTTCAAAGAATTCCCAGTTGGGTTCTTCTCCAAAAGACTCATCATCAAATCTTGAGCTAACAGAGTTCGAGAATCTGTCGGTGAGAGTTCAAACATCTCC TTCTTCAGAGATACCAAAGCCAAGCCCAGCTCCGAGTCCAACACCACACAAGCCTCCAAAAATCCCAACAACAGACTCCATAACAAGAAGAAAATCACTT GCAAGGTCTGAATTTTCGAAGCCAAAATCAAGACTGGTAGAGCCATCCTATCCATATGATGCAATCTTAAAGGAAGAGATGAAGACCGGCCAGTCGGGGA ATTCAAGCTCACCGCGTAATGTTGCTTCACCAAATGACACACATGGTGTTACTACACCAAGGGATAACTTGAGGTCAGCTCCAATCACCCCAAAAACACC CTTAATTGGAACGCCAGGACTAGACGATGATGATGATGAGGTCTATAGGACGGCAATTCTTAATTTGGGCAAAATTAGGGGTAAGAAATGGAAAGTATTA CCCTTGATTGAGTTAGTTGCATTTGTGTGCATTATGGGACTGTTAATTGCCAGCTTGACTGTTGACGGATTGCTGAATTCAAAGATTTGGAGTTTGAAGT TATGGAAATGGTGTGTGCTCGTATTAGTTATTTTCAGTGGTAGATTGTTTACCGAGTGGTTTATGAATGTTTTGGTTTTCTTGATTGAAAGGAACTTCTT GCTTAAGAAGAAGGTGCTTTATTTTGTATATGGGTTGAAAAAGAGTGTTCAGGCTTTTATTTGGTTAGGCTTGGTACTGCTAGCTTGGGGTTTGTTGTTT GAAAGTGGAGTTAAACGATCCAGGCGAACTACCAAGATTCTGAATAAAATTACAAGAGCCCTTGCTGGTTGTCTCATCGGGGCTGCTATATGGCTGGCGA AAACCTTTTCACTTAAGTTGCTAGCTTCTTCTTTTCATGTTACTAGATTCTTTGATAGAATTCAGGAATCAATATTTCATCAGTATGTTCTCATAACTCT TTCTGGGCCTCCCGTGATGGAGATGGCTGAAAGCATTGCGAGCACTAAGACGCTGCCGGGCCAGTTGAGTTTTACGAATACTAACAAACGGAATGAAGAG AAAAAAGAAGAGGTGATTGATGTTGATAAGCTTAAGAAAATGAAACATGGGAAGATCTCTGCTTGGACCATGAAGGGATTGATTAATGTGATTAGTGGTT CTGGCTTATCCACTCTCTCCAACAACCTTGACCAGAGTGATGAGGAGGATGCTGAGAAGAAGGATGAAGAGATTACTAGTGAGTGGGAAGCAAGGGCTGC GGCTTATAAGATTTTCAGGAATGTGGCAAAGCCTCATAGCAAGTACATTGAAGAAGATGACCTCTTGCGGTTCATGAAAAAGGAAGAGGTGGACAACGTA ATTCCACTCTTTGAAGGAGCAACAGAAACTCGAAAGATCAAGAGATCAGCTTTAAAAAATTGGCTGGTGAATGTTTATAATGAGCGCAAATCATTGGCAC ACTCCTTGAATGACACAAAAACAGCCATTGAGGAGCTGAACAAATTGGCTTCTGCTGCTGTGCTTGTTGTGATCGTTGCTGTGTGGTTGCTTGTGATGGG ATATTTAACAACCAAAGTGCTTGTCTTCATTTCATCTCAATTATTACTCGTGGTTTTCATTTTTGGTAACAGTGCCAAGACCGTGTTCGAAGCTATCATA TTTGTGTTCGTCATGCACCCATTTGATGTCGGTGATCGTTGTGTCATTGATGGAGTGCAGATGGTTGTTGAAGAGATGAACATTTTGACCACTGTCTTTT TAAGATACGACAATGAGAAAATATTCTATCCAAATACAGTTCTTGCTACCAAACCTATCAGCAACTTTTACAGGAGCCCAGAAATGAGTGATTCTGTGGA ATTCGCTGTTGATATATCCACTTCAATTGAGACTATTGGAGCTCTGAAAGCTAGGATAAAAACGTACTTGGAGAGCAAGCCACAGCACTGGCGGCCTGGT CACAGTGTTCAAGTTAAAGAGATTGAGAATGTGAATAAGATGAGAATGGCCCTCTATGCTAATCACACTATAAACTTCCAGAACAGTGGAGATAGGGGAA ACAGAAGATCTGATCTAGTGTTAGAGTTGAAGAAATGTTTCGAAGATCTTGGTATTAAGTACCATCTTCTGCCTCAACAAGTTCACCTCAGCTATGTCGG GACAGCAGCTTCAGTAGCTCCAACGCTTGCAAGATGA
AA sequence Show only first row Show all	>Potri.006G144100.1 pacid=42770223 polypeptide=Potri.006G144100.1.p locus=Potri.006G144100 ID=Potri.006G144100.1.v4.1 annot-version=v4.1 MEAGKGVIDKKGTNDVVIHISTTNQDATTKAYSFSKNSQLGSSPKDSSSNLELTEFENLSVRVQTSPSSEIPKPSPAPSPTPHKPPKIPTTDSITRRKSL ARSEFSKPKSRLVEPSYPYDAILKEEMKTGQSGNSSSPRNVASPNDTHGVTTPRDNLRSAPITPKTPLIGTPGLDDDDDEVYRTAILNLGKIRGKKWKVL PLIELVAFVCIMGLLIASLTVDGLLNSKIWSLKLWKWCVLVLVIFSGRLFTEWFMNVLVFLIERNFLLKKKVLYFVYGLKKSVQAFIWLGLVLLAWGLLF ESGVKRSRRTTKILNKITRALAGCLIGAAIWLAKTFSLKLLASSFHVTRFFDRIQESIFHQYVLITLSGPPVMEMAESIASTKTLPGQLSFTNTNKRNEE KKEEVIDVDKLKKMKHGKISAWTMKGLINVISGSGLSTLSNNLDQSDEEDAEKKDEEITSEWEARAAAYKIFRNVAKPHSKYIEEDDLLRFMKKEEVDNV IPLFEGATETRKIKRSALKNWLVNVYNERKSLAHSLNDTKTAIEELNKLASAAVLVVIVAVWLLVMGYLTTKVLVFISSQLLLVVFIFGNSAKTVFEAII FVFVMHPFDVGDRCVIDGVQMVVEEMNILTTVFLRYDNEKIFYPNTVLATKPISNFYRSPEMSDSVEFAVDISTSIETIGALKARIKTYLESKPQHWRPG HSVQVKEIENVNKMRMALYANHTINFQNSGDRGNRRSDLVLELKKCFEDLGIKYHLLPQQVHLSYVGTAASVAPTLAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.006G144100 [exp]	0	1
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Potri.011G031300 [exp]	1.73	0.9878	Pt-PSBQ2.2
AT1G30380		PSAK	photosystem I subunit K (.1)		Potri.018G027600 [exp]	2.00	0.9899	Pt-PSAK.1
AT1G74730			Protein of unknown function (D...		Potri.012G070600 [exp]	2.82	0.9887
AT1G08380		PSAO	photosystem I subunit O (.1)		Potri.009G160800 [exp]	3.46	0.9854
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Potri.010G087300 [exp]	3.87	0.9858
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Potri.001G210000 [exp]	4.00	0.9862	Pt-LHCB6.2,1
AT1G30380		PSAK	photosystem I subunit K (.1)		Potri.006G254200 [exp]	4.58	0.9851	PSAK.2
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Potri.009G067300 [exp]	5.74	0.9805
AT5G04590		SIR	sulfite reductase (.1)		Potri.009G052600 [exp]	6.00	0.9818
AT2G30570		PSBW	photosystem II reaction center...		Potri.002G044300 [exp]	6.32	0.9834

Compare expression of checked genes

Potri.006G144100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.