Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17600 90 / 1e-21 RING/U-box superfamily protein (.1) AT1G04360 88 / 9e-21 RING/U-box superfamily protein (.1) AT4G17905 83 / 4e-19 ATL4H RING/U-box superfamily protein (.1) AT5G05810 82 / 1e-18 ATL43 RING/U-box superfamily protein (.1) AT3G16720 81 / 2e-18 ATL2 TOXICOS EN LEVADURA 2 (.1) AT3G03550 81 / 3e-18 RING/U-box superfamily protein (.1) AT5G10380 79 / 1e-17 ATRING1, RING1 RING/U-box superfamily protein (.1) AT2G17450 77 / 1e-17 RHA3A RING-H2 finger A3A (.1) AT1G72310 79 / 2e-17 ATL3 RING/U-box superfamily protein (.1) AT4G15975 77 / 2e-17 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G206200 [exp] 106 / 4e-29 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1) Potri.008G054200 [exp] 104 / 1e-28 AT1G20823 80 / 6e-19 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 94 / 7e-23 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 89 / 4e-21 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 89 / 6e-21 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 87 / 9e-21 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 87 / 2e-20 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.003G184800 [exp] 84 / 3e-20 AT2G37580 120 / 6e-34 RING/U-box superfamily protein (.1) Potri.008G219200 [exp] 85 / 6e-20 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005954 [exp] 111 / 3e-29 AT3G04020 111 / 7e-28 unknown protein Lus10029456 [exp] 90 / 2e-23 AT5G10380 86 / 3e-21 RING/U-box superfamily protein (.1) Lus10013618 [exp] 93 / 9e-23 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10027736 [exp] 83 / 3e-20 AT4G17905 89 / 8e-22 RING/U-box superfamily protein (.1) Lus10037490 [exp] 86 / 9e-20 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10006493 [exp] 85 / 9e-20 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10012975 [exp] 85 / 2e-19 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10034953 [exp] 84 / 5e-19 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10000885 [exp] 78 / 6e-19 AT2G20030 79 / 1e-18 RING/U-box superfamily protein (.1) Lus10012745 [exp] 82 / 2e-18 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.006G144200.1 pacid=42767723 polypeptide=Potri.006G144200.1.p locus=Potri.006G144200 ID=Potri.006G144200.1.v4.1 annot-version=v4.1 ATGGTAGATAATATTACAAGCCCTTTATTTGAGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACACAAATCCAATCTGCCAATGTTATATTATGGCC TAGTAGTTGTTGGCACAGCTGCTATAGTGCTAGCTGTTTACAACCTTATAATCATCAAGTGGTGCGCTCAACGTGGAGGCCGATCAGGGCAGGGACCAAA TGTGTTTACAGAGGTAACAGCAAGCCAGAGTTTTGAACACTCCAACAGCAACTTGCCGTCTAGTTTCAAGTACAAAAAGGGAAAAATAGACGGTGACCAA GACCAGGGAAGTGGCTATGAATGTGCTGTTTGCTTATCGGCTTTTGAAGAGGGAGAAGAGGTTAGGCAATTGCCAAGGTGTAAGCACTCATTTCATGCTC CTTGTATAGATATGTGGCTATATTCCCACTCTGATTGCCCGCTTTGTCGTTCAAGTGTTGATCCTCCTCTTGCGGTGTGTAATAGAAGAACGGCCGCGGC GGCAGCCGATACATCGGAGAATTCTAGAGAAGGGTTACTGGATTCAGCCATCAATAATACTGTATGA
AA sequence Show only first row Show all	>Potri.006G144200.1 pacid=42767723 polypeptide=Potri.006G144200.1.p locus=Potri.006G144200 ID=Potri.006G144200.1.v4.1 annot-version=v4.1 MVDNITSPLFESPPPPPPPPPPHKSNLPMLYYGLVVVGTAAIVLAVYNLIIIKWCAQRGGRSGQGPNVFTEVTASQSFEHSNSNLPSSFKYKKGKIDGDQ DQGSGYECAVCLSAFEEGEEVRQLPRCKHSFHAPCIDMWLYSHSDCPLCRSSVDPPLAVCNRRTAAAAADTSENSREGLLDSAINNTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17600			RING/U-box superfamily protein...		Potri.006G144200 [exp]	0	1
AT2G35790			unknown protein		Potri.008G042800 [exp]	3.00	0.8702
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G020600 [exp]	6.70	0.8196
AT2G31130			unknown protein		Potri.004G055300 [exp]	7.34	0.8423
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Potri.016G137350 [exp]	7.74	0.8317
AT1G02260			Divalent ion symporter (.1)		Potri.015G146900 [exp]	9.16	0.7824
AT4G21740			unknown protein		Potri.001G371800 [exp]	10.58	0.8206
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.007G054200 [exp]	12.40	0.8047	Pt-HLS1.2
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Potri.003G111900 [exp]	15.00	0.8382
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.005G004600 [exp]	18.16	0.8182
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Potri.016G137300 [exp]	18.89	0.8023

Compare expression of checked genes

Potri.006G144200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.