Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13750 1260 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G26140 1127 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT3G52840 1120 / 0 BGAL2 beta-galactosidase 2 (.1) AT4G36360 1099 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT5G56870 1079 / 0 BGAL4 beta-galactosidase 4 (.1) AT1G45130 964 / 0 BGAL5 beta-galactosidase 5 (.1) AT2G28470 934 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT2G32810 861 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G63810 788 / 0 BGAL10 beta-galactosidase 10 (.1) AT5G20710 757 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038500 [exp] 1287 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 1268 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G018100 [exp] 1128 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G232600 [exp] 1127 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 984 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 927 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G099800 [exp] 894 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.017G057900 [exp] 868 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.011G044300 [exp] 843 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037644 [exp] 1257 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 1250 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 1246 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10041798 [exp] 1110 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025980 [exp] 1105 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10006009 [exp] 1083 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10028848 [exp] 1078 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10008974 [exp] 1069 / 0 AT4G26140 1068 / 0.0 beta-galactosidase 12 (.1.2) Lus10028348 [exp] 1035 / 0 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2) Lus10040557 [exp] 987 / 0 AT4G26140 1001 / 0.0 beta-galactosidase 12 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01301 [poplar] [flax] Glyco_hydro_35 Glycosyl hydrolases family 35 CL0058 [poplar] [flax] PF02140 [poplar] [flax] Gal_Lectin Galactose binding lectin domain
Representative CDS sequence Show only first row Show all	>Potri.006G144500.1 pacid=42767609 polypeptide=Potri.006G144500.1.p locus=Potri.006G144500 ID=Potri.006G144500.1.v4.1 annot-version=v4.1 ATGTGGAACGTTTTCTTGCTGCTGCTGCTGCTGCAACTTTTATTCTTCTTCTCTTCACGGATTTCTACTGTTACAGCTTCTGTGTCCTATGATCATAAAG CTGTTATAATCAATGGGCAGAGAAGGATTCTTATTTCTGGCTCAATACACTACCCAAGAAGCACTCCTGAGATGTGGCCTGATCTTATTCAAAAGGCCAA AGACGGAGGAGTGGATGTGATTCAAACTTATGTCTTCTGGAATGGACATGAGCCCTCTCCTGGAAACTATTATTTTGAGGACAGGTATGATTTGGTTAAG TTCATCAAGCTGGTTCAACAAGCAGGCCTTTATCTTCATCTGCGGATTGGCCCCTATATTTGTGCTGAATGGAACTTTGGGGGATTTCCTGTGTGGCTAA AATATGTTCCTGGTATTGAATTTAGAACCGACAACGGGCCTTTCAAGGCGGCAATGCAAAAGTTCACTGAGAAGATTGTGGGCATGATGAAGTCAGAAAA GTTGTTTGAAAACCAAGGAGGCCCAATAATTCTTTCCCAGATAGAAAATGAATATGGACCAGTGGAATGGGAAATTGGTGCACCTGGTAAAGCCTATACA AAATGGGCAGCTGACATGGCAGTGAAGCTTGGTACAGGAGTCCCATGGATTATGTGCAAGCAAGAAGATGCCCCAGATCCCATGATAGACACCTGCAATG GATTCTACTGTGAAAACTTCAAACCAAACAAGGACTATAAACCCAAAATATGGACAGAAGCCTGGACTGGCTGGTATACTGAATTTGGTGGTGCTGTTCC TCATAGGCCAGCAGAAGACATGGCATTTTCAGTCGCAAGGTTCATACAAAATGGTGGTTCATACATTAACTACTATATGTACCATGGAGGAACTAACTTC GGAAGAACCGCTGGCGGTCCCTTCATTGCCACTAGCTACGATTATGATGCCCCTCTTGATGAATTCGGATTACCAAGGGAACCAAAGTGGGGGCATTTGA GAGATTTGCACAAAGCCATCAAGCTATGTGAACCTGCTTTAGTTTCTGTTGATCCCACTGTAACATCACTTGGGAGTAATCAAGAGGCTCATGTATTCAA GTCAAAGTCGGTATGTGCTGCATTTCTTGCCAACTATGATACAAAATACTCTGTGAAGGTGACCTTTGGTAATGGACAATATGAATTGCCGCCTTGGTCC GTCAGCATTCTCCCTGATTGCAAGACTGCGGTTTATAACACGGCAAGGCTCGGTTCCCAAAGCTCACAAATGAAAATGGTTCCAGCGAGTAGCTCATTTT CCTGGCAATCATACAATGAAGAAACTGCATCAGCTGATGATGATGATACAACTACAATGAATGGGTTGTGGGAGCAAATAAATGTGACAAGGGATGCCAC AGACTACTTGTGGTACCTGACAGATGTCAAAATAGACGCCGATGAAGGATTTCTGAAGAGTGGACAGAATCCTCTTCTCACAATTTTCTCCGCTGGTCAT GCTTTGCATGTATTTATCAATGGTCAACTAGCAGGAACCGCGTATGGGGGATTATCAAATCCTAAGTTGACGTTTAGCCAGAACATCAAATTGACAGAAG GGATTAACAAGATCTCTTTGTTGAGTGTTGCTGTTGGTCTCCCGAACGTTGGCCTGCATTTTGAGACATGGAATGCCGGGGTTCTAGGTCCAATCACCCT GAAGGGTCTGAATGAGGGGACGAGAGACCTGTCAGGGCAGAAATGGTCATACAAGATTGGTCTGAAAGGTGAATCACTGAGCCTTCATACTGCTAGTGGG AGTGAATCTGTTGAATGGGTGGAAGGATCACTATTGGCTCAAAAACAAGCACTGACCTGGTACAAGACAGCTTTTGATGCACCACAAGGCAATGATCCCC TGGCTTTAGATATGAGTAGCATGGGGAAAGGTCAGATGTGGATAAATGGACAAAATATAGGACGGCATTGGCCGGGATATATAGCTCATGGCAGTTGTGG TGACTGCAATTATGCTGGAACTTTTGATGACAAAAAATGTCGGACTAATTGTGGGGAGCCCTCACAGAGATGGTACCATGTTCCTCGCTCATGGCTTAAG CCGAGTGGGAATCTCTTAGCTGTGTTCGAAGAATGGGGTGGTGATCCAACTGGAATTTCTTTTGTCAAAAGAACTACTGCAAGTGTCTGTGCTGATATCT TTGAAGGGCAGCCGGCGTTGAAGAACTGGCAGGCGATAGCCTCAGGCAAAGTCATCAGCCCGCAACCCAAAGCCCACCTGTGGTGTCCTACGGGACAGAA GATATCTCAGATAAAGTTTGCTAGCTTCGGAATGCCTCAGGGCACATGCGGAAGCTTTCGGGAGGGGAGCTGCCATGCCCACAAGTCATACGATGCCTTT GAAAGAAATTGTGTTGGAAAGCAGTCGTGCTCAGTGACTGTAGCTCCTGAAGTTTTCGGAGGAGATCCATGTCCAGATAGTGCAAAGAAGCTATCAGTTG AGGCTGTCTGCAGCTGA
AA sequence Show only first row Show all	>Potri.006G144500.1 pacid=42767609 polypeptide=Potri.006G144500.1.p locus=Potri.006G144500 ID=Potri.006G144500.1.v4.1 annot-version=v4.1 MWNVFLLLLLLQLLFFFSSRISTVTASVSYDHKAVIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGVDVIQTYVFWNGHEPSPGNYYFEDRYDLVK FIKLVQQAGLYLHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVGMMKSEKLFENQGGPIILSQIENEYGPVEWEIGAPGKAYT KWAADMAVKLGTGVPWIMCKQEDAPDPMIDTCNGFYCENFKPNKDYKPKIWTEAWTGWYTEFGGAVPHRPAEDMAFSVARFIQNGGSYINYYMYHGGTNF GRTAGGPFIATSYDYDAPLDEFGLPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKSVCAAFLANYDTKYSVKVTFGNGQYELPPWS VSILPDCKTAVYNTARLGSQSSQMKMVPASSSFSWQSYNEETASADDDDTTTMNGLWEQINVTRDATDYLWYLTDVKIDADEGFLKSGQNPLLTIFSAGH ALHVFINGQLAGTAYGGLSNPKLTFSQNIKLTEGINKISLLSVAVGLPNVGLHFETWNAGVLGPITLKGLNEGTRDLSGQKWSYKIGLKGESLSLHTASG SESVEWVEGSLLAQKQALTWYKTAFDAPQGNDPLALDMSSMGKGQMWINGQNIGRHWPGYIAHGSCGDCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLK PSGNLLAVFEEWGGDPTGISFVKRTTASVCADIFEGQPALKNWQAIASGKVISPQPKAHLWCPTGQKISQIKFASFGMPQGTCGSFREGSCHAHKSYDAF ERNCVGKQSCSVTVAPEVFGGDPCPDSAKKLSVEAVCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.006G144500 [exp]	0	1
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G191051 [exp]	7.48	0.7390
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Potri.002G036000 [exp]	7.68	0.6372
AT3G60460	MYB	DUO1	DUO POLLEN 1, myb-like HTH tra...		Potri.002G140900 [exp]	12.12	0.7269
AT3G22750			Protein kinase superfamily pro...		Potri.010G083500 [exp]	13.22	0.7172
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Potri.001G343500 [exp]	15.00	0.6702
AT4G09060			unknown protein		Potri.002G101400 [exp]	21.35	0.7145
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.005G105600 [exp]	21.44	0.7007
AT5G15880			unknown protein		Potri.017G110300 [exp]	22.27	0.7182
AT2G47010			unknown protein		Potri.002G187700 [exp]	27.16	0.6554
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Potri.015G033100 [exp]	29.24	0.6801

Compare expression of checked genes

Potri.006G144500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.