Plant FIBer expression Database

Potri.006G144700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G13980 130 / 2e-34 unknown protein
AT1G54200 124 / 3e-32 unknown protein
AT3G42800 111 / 2e-27 unknown protein
AT5G12050 54 / 6e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G065000
[exp]
478 / 2e-169 AT3G42800 139 / 1e-37 unknown protein
Potri.003G063400
[exp]
164 / 3e-46 AT1G54200 173 / 7e-50 unknown protein
Potri.001G170500
[exp]
161 / 3e-45 AT1G54200 167 / 2e-47 unknown protein
Potri.006G222700
[exp]
145 / 4e-39 AT1G54200 114 / 4e-28 unknown protein
Potri.018G049900
[exp]
127 / 1e-32 AT1G54200 122 / 5e-31 unknown protein
Potri.010G154200
[exp]
45 / 7e-05 AT1G69160 114 / 2e-29 unknown protein
Potri.008G098200
[exp]
43 / 0.0003 AT1G69160 134 / 2e-36 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008457
[exp]
127 / 2e-33 AT3G13980 151 / 1e-42 unknown protein
Lus10037659
[exp]
115 / 7e-29 AT3G13980 193 / 9e-59 unknown protein
Lus10025011
[exp]
110 / 8e-27 AT3G13980 115 / 1e-28 unknown protein
Lus10026463
[exp]
103 / 3e-24 AT1G54200 107 / 7e-26 unknown protein
Lus10015641
[exp]
101 / 6e-24 AT3G13980 176 / 3e-52 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G144700.2 pacid=42767619 polypeptide=Potri.006G144700.2.p locus=Potri.006G144700 ID=Potri.006G144700.2.v4.1 annot-version=v4.1
ATGTACAAGAAGGAGAGATCTTCAAGGGAAAGCACATTCCATCCAAGAAGAAGAACCCCGTCTTTCTCTTCAACTCTTCTTGACTCTATTTACCGTTCGA
TTGACGAATCCAACGGTGAAGAACAGCATGTGCTGGGGATCAAGAAACAGAGTTGCAACTCTGTTTCTACAACCAGGCGTGATACGTCGTTTCTTGAAGA
GGAGAAAGAGGTATCTACTACTCTTAGACGAGCTGTCAGGACTGAGAGCTGGATGGACAAGAAAAGCACTCGTGGCTCCATGCAATATAATTCGACTTCA
AGCTCTTCAGATTCTAGCTCTGCAGGAGGAGGAGGAAGCGGAGGAGGTGTGTTCTCGTCCTCCGAAAACGAGTCAAGTGTCAGAGGAAACTCAAGTTCTT
GCCAACAGAGAACAAAACCACTTTCAGACAAACCACATCAGAAACCGAAATGTGAAGGAGGAGGGTTTCATAAGACGAAGCTAAGAGCATTAAAAATCTA
CGGTGAATTAAAGAAGGTAAAGCAGCCGATTTCACCAGGTGGTCGCATTGCAAGCTTTCTAAATTCTATTTTCAATTCAGCAAGTGCTGCAAAAAAAGTG
AAAATGTGCTCTATTGGGGCCATGGATGATGTAAGTTTTGAGCGTAAATCAAAGTCTGCTTGCTCATCGGCTACTTCCTTTTCAAGGTCCTGTTTGAGCA
AAACACCTCCTCCAAGAGGGAAACCAAGTAATGGCACAAAAAGGTCAGTTCGATTCTATCCTGTTGGTGTCATTGTTGATGAGGATTCAAGACCTTGTGG
GCATAAAAGTATTTATGAAGATGATCCAGGATTGATGCCAACGCCTCGAAAAGTGGTCAAAAGTAGTTCTGTCAAGGAATTAGAGGTTGCTAAAGGAGCA
GCAGCAGATTATTTAAGAAGTTATCACCAAAGGAAGAATGTTAGTGAATTTGATTTCAGGGGTTTCCACAATTATGTTGCAGATGACAGTGACAGTGACG
ACGAGAGTTGTACAAGCTCCGATCTTTTCGAGCTCGATCATCTTATTGGGATTGGAAGGTACAGAGAGGAGCTCCCAGTGTATGAAACCACTAACTTCAA
AACTAATCAGGCCATTGCTAATGGCTTTTTCCCGTAA
AA sequence
>Potri.006G144700.2 pacid=42767619 polypeptide=Potri.006G144700.2.p locus=Potri.006G144700 ID=Potri.006G144700.2.v4.1 annot-version=v4.1
MYKKERSSRESTFHPRRRTPSFSSTLLDSIYRSIDESNGEEQHVLGIKKQSCNSVSTTRRDTSFLEEEKEVSTTLRRAVRTESWMDKKSTRGSMQYNSTS
SSSDSSSAGGGGSGGGVFSSSENESSVRGNSSSCQQRTKPLSDKPHQKPKCEGGGFHKTKLRALKIYGELKKVKQPISPGGRIASFLNSIFNSASAAKKV
KMCSIGAMDDVSFERKSKSACSSATSFSRSCLSKTPPPRGKPSNGTKRSVRFYPVGVIVDEDSRPCGHKSIYEDDPGLMPTPRKVVKSSSVKELEVAKGA
AADYLRSYHQRKNVSEFDFRGFHNYVADDSDSDDESCTSSDLFELDHLIGIGRYREELPVYETTNFKTNQAIANGFFP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G13980 unknown protein Potri.006G144700
[exp]
0 1
AT4G00710 BSK3 BR-signaling kinase 3 (.1) Potri.002G158400
[exp]
1.41 0.9150
AT5G14390 alpha/beta-Hydrolases superfam... Potri.001G340000
[exp]
2.44 0.8673
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.001G355900
[exp]
4.89 0.8657
AT1G71090 Auxin efflux carrier family pr... Potri.008G127700
[exp]
7.48 0.8579
AT2G01950 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like ... Potri.010G101100
[exp]
7.74 0.8386
AT2G36910 ATMDR1, ATPGP1,... P-GLYCOPROTEIN 1, ARABIDOPSIS ... Potri.006G123900
[exp]
9.16 0.8495 Pt-PGP1.1
AT1G07410 ATRAB-A2B, AtRA... ARABIDOPSIS RAB GTPASE HOMOLOG... Potri.008G061300
[exp]
9.48 0.8524 RAB11.9
AT2G01818 PLATZ transcription factor fam... Potri.008G137300
[exp]
9.74 0.8648
AT4G30410 sequence-specific DNA binding ... Potri.006G177000
[exp]
15.55 0.8385
AT2G33640 DHHC-type zinc finger family p... Potri.005G254432
[exp]
16.30 0.8482

Potri.006G144700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.