Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55550 103 / 5e-27 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 91 / 2e-22 Concanavalin A-like lectin protein kinase family protein (.1) AT1G15530 89 / 9e-22 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59700 87 / 7e-21 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1) AT3G59730 86 / 9e-21 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 86 / 1e-20 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 86 / 1e-20 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59750 84 / 4e-20 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59270 84 / 4e-20 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59740 84 / 5e-20 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G058400 [exp] 128 / 1e-35 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.010G200600 [exp] 113 / 2e-30 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 94 / 2e-23 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 94 / 2e-23 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.015G083300 [exp] 93 / 3e-23 AT1G15530 759 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088400 [exp] 91 / 1e-22 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 91 / 2e-22 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.016G101000 [exp] 91 / 2e-22 AT3G55550 704 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.012G084900 [exp] 91 / 2e-22 AT1G15530 734 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040276 [exp] 115 / 8e-31 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004710 [exp] 104 / 8e-28 AT3G55550 486 / 7e-169 Concanavalin A-like lectin protein kinase family protein (.1) Lus10010867 [exp] 93 / 4e-23 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10024365 [exp] 93 / 4e-23 AT3G55550 711 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014037 [exp] 89 / 1e-21 AT1G15530 807 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 89 / 1e-21 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 89 / 1e-21 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10019879 [exp] 89 / 2e-21 AT1G15530 621 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 88 / 2e-21 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 87 / 4e-21 AT2G37710 755 / 0.0 receptor lectin kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G144850.1 pacid=42770363 polypeptide=Potri.006G144850.1.p locus=Potri.006G144850 ID=Potri.006G144850.1.v4.1 annot-version=v4.1 ATGAACCCTGGTGACTTCCATAATAATTGCTGGTTGTTGGTTTGGAGCGGATTTAGCTACAAGTTGTCCTATCAAGAACGAAAGAAAGCTACAAGGGGTT TTAGGGGAAAGGAGCTGCTTGGCTTTGATGGACATGGTAAAGTTTACGAAGGAACTCTGCTGAATTGTAACACTCAAGTAGCAGTCAAGCGATTCTTTCA TGAATCTAAACAAGGTTTGAGGGAATTTTCAACAGAGATCTCTGGTATTGGTCATCTCCACCACAAGAATTTGGTTTGTATGCTAGGATGGTCGTGCCGA CGAGGGCGAAGAATTGCTCTCACTAAAAGACAACGGCAGAAATGTTGA
AA sequence Show only first row Show all	>Potri.006G144850.1 pacid=42770363 polypeptide=Potri.006G144850.1.p locus=Potri.006G144850 ID=Potri.006G144850.1.v4.1 annot-version=v4.1 MNPGDFHNNCWLLVWSGFSYKLSYQERKKATRGFRGKELLGFDGHGKVYEGTLLNCNTQVAVKRFFHESKQGLREFSTEISGIGHLHHKNLVCMLGWSCR RGRRIALTKRQRQKC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55550			Concanavalin A-like lectin pro...		Potri.006G144850 [exp]	0	1
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Potri.009G093100 [exp]	1.41	0.7732
AT4G33985			Protein of unknown function (D...		Potri.005G138100 [exp]	8.83	0.7155
AT1G80530			Major facilitator superfamily ...		Potri.003G016725 [exp]	11.18	0.7170
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Potri.002G229100 [exp]	15.87	0.6726
AT5G45540			Protein of unknown function (D...		Potri.003G064200 [exp]	24.55	0.7651
AT1G03990			Long-chain fatty alcohol dehyd...		Potri.002G259700 [exp]	36.22	0.6615
AT5G09270			unknown protein		Potri.005G066900 [exp]	40.31	0.6748
AT5G49525			unknown protein		Potri.013G007500 [exp]	40.63	0.7005
AT3G18280			Bifunctional inhibitor/lipid-t...		Potri.012G054300 [exp]	50.07	0.6509
AT2G01080			Late embryogenesis abundant (L...		Potri.003G021934 [exp]	50.55	0.6645

Compare expression of checked genes

Potri.006G144850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.