Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20610 565 / 0 unknown protein AT5G26160 424 / 2e-131 unknown protein AT1G42550 101 / 1e-21 PMI1 plastid movement impaired1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G224200 [exp] 731 / 0 AT5G26160 641 / 0.0 unknown protein Potri.005G255500 [exp] 108 / 8e-24 AT1G42550 754 / 0.0 plastid movement impaired1 (.1) Potri.002G006100 [exp] 102 / 7e-22 AT1G42550 796 / 0.0 plastid movement impaired1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021568 [exp] 968 / 0 AT5G20610 827 / 0.0 unknown protein Lus10017162 [exp] 900 / 0 AT5G20610 762 / 0.0 unknown protein Lus10039886 [exp] 112 / 8e-25 AT1G42550 816 / 0.0 plastid movement impaired1 (.1) Lus10002170 [exp] 110 / 3e-24 AT1G42550 818 / 0.0 plastid movement impaired1 (.1) Lus10025003 [exp] 105 / 2e-23 AT5G20610 97 / 2e-21 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF10358 [poplar] [flax] NT-C2 N-terminal C2 in EEIG1 and EHBP1 proteins
Representative CDS sequence Show only first row Show all	>Potri.006G145500.2 pacid=42767132 polypeptide=Potri.006G145500.2.p locus=Potri.006G145500 ID=Potri.006G145500.2.v4.1 annot-version=v4.1 ATGATGTTGTCGAAAATTGAAGGCGGGAAAAAGATCAGAGAGGATTCAGGTAATGGCAAGTTGTTGAGTGAAATTGAAACTATAAGCAAAGCCCTTTATC TTGACAAAAACCTTTCAAGAACGGCCTCCGTTTCTACATCTAGTAATCGACCCAGATCAACTGGAAAAACCCAGTTGGTAGATCCTAAATCGAAGCTTGA TAATAAACATGGTAGTGAAGACCCGTCTCGCAAGGACAAGAAGTCAATTTGGAATTGGAAGCCTTTAAAAGCCTTTTCAAATGCAAGGAACCGTGAGTTC AATTGTTGTTTCTCTCTTCAAGTCCATTCCATCGAAGGGTTTCCCTCCACTTTTGACAATTTAAGTGTTTGTGTTCACTGGAAGAGACGGGATGGCGAGT TGGTGACGAGCCCTGTCAAGGTTTTTGAAGGGATTGCAGAGTTTGAGGAGAAGCTTACGCATACGTGCGTTGTATATGGGAGTAGGAGCGGACCCCACCA CTCAGCTAAGTACGAGGCTAAACATTTTTTGCTCTATGCAGCTCTATTTGGGGCAATGGACCTGGATTTGGGGAAGCATAGGGTTGACCTCACGAGGCTG CTTCCTCTCACATTGGAGGAATTAGAGGAGGACAAGAGCTCGGGAAAGTGGACTACAAGTTATAAGTTGTCAGGAGAAGCTAAAGGTGCTAAGATGAATG TTAGTTTTGGGTACACGGTGGTTAGTGATACTCCCATCTTCCCCAGAAATAATCAGAATGTTAATGAGCTGTTGAGGGTGAAGCTGAATAATGCAAGAAC AGTGAAACCAGCACCTAAACTTTGTCAAGGTGATGCCAAAAGCATGGTATATCGTACTGGAAGTCTTCCTGGTAATTATAACCAGCAGCGCCGCGCTGCA TCTCGTTCTGTAGAAGATGTAAAAGATCTCCATGAGGTGTTGCCGGTATCAAGTTCAGAACTTGATATTCCTGTAAATATCCTGCATCAGAAATTAGAAG ACAAGTTGGATGCTTCAGGTTATAACCCTGAATTTGACGTGTTCACTGAAAATCTTGAGCCAATTAAACAACCCTCCATCTGTGATTCAGATTTGATAAA AAAAGGAACAGAAAATGAGAGTGAAAATAGTGAATTTGCTGTGATTGATCAGGGGATAGAATTGTCATCAGAGGAAGTTAACATAATGTCTGCAGATGTT TCTACTGTAGATGTTAAAATGGATACTGGTTGTCATGTAGCTTCTGAAGAGGTCACTAAGCTTCATCTGCATGATGTGGAAAACAGCAATCATGAAGACG AGCTTGGGTCACATGATTGCAATTTCAAGGATGAAATATGCTCAAAAGAGTCTGTGATGGAAGAATTGGAATCTGCACTAAAAAGCATTTCCATTTTGGA AAGTGACGCGCTTGATTCCCCTGAAGAAAAGGAGGATTACACGGAAGTAAAAACTGGGACGTCGCTTAGCTTAGATGATCTAACTGAATCTGTGGCAAAT GAATTCCTGGACATGCTGGGGATGGAGCAAAGTCCATTTGGCTCGAGTTCAGAGAGTGAACCTGAGTCTCCTAGGGAACGCTTGTTAAGACAATTTGAGA AGGATGCCTTGGCTGGCGGTGGTTCTCTGTTTGACTTTGATGTGGACTATGGTGACCAAAGAGAATGTGACTATTATGCCTCAACTGCATCTGGGTTGGG AAACTTCTCTGAGGATTTTGAACTGTTATCAGTTATCCAAACTGCTGAGGAGGAGCTGATGGGAACTCAGTCTGTCAGTGGAAAAGCAAGGGTCAGAATG TTGGAAGACTTGGAGACTGAGTCTTTAATGCGTGAATGGGGCTTGAATGATAAGGCTTTTGATTGTTCTCCACCTAAGAGCTCTGGTGGCTTTGGGAGTC CTATCGATTTGCCTCCTGAAGAGCCGTTTGAATTACCTGCTCTTGGAGAAGGATTGGGTTCATTTCTGCAGACAAAGAACGGTGGATTCTTGAGGTCCAT GAATCCTTCAATTTTCCAGAAAGCGAAAAACAGTGGGCACTTGATCATGCAAGTTTCTAGTCCTGTTGTGGTACCAGCAGAAATGGGTTCTGGTATAGTG GATATACAGCAGCGATTGGCTTCAATTGGAATTGAAAAGCTTTCTATGCAAGCAAATAAGCTCATGCCTTTGGAAGATATCACTGGGAAAACAATGCAAC AAGTAGCATGGGAAGCTGGTGCCACTCTGGAGGGACCTGAGAGGCAAAGTTTGTTACAGCAAGAATACACTATGGATGATGCATCTCTTGGGCAAACAAG TGTGAATGACAGATCTTCTGCACCCAGATCTAATAAGCTCAGTTCAGGCTCATTGGGTAGTGAGACAGGCTCAGAATACGTATCTCTAGAAGATCTTGCC CCTTTGGCTATGGATAAGATAGAAGCACTCTCAATTGAGGGATTGAGAATACAATCTGGTATGTCAGATGAGGAAGCACCCTCGAACATCAGAGCACAAT CTATTGGAGAAATTTCCTCCCTCCAGGGAAAGGGTGTTGACATCAGTGGCTCACTTGGTTTGGAAGGAACCGCTGGATTGCAACTGTTGGACATAAAAGA TAGTGCAGATGACATCGATGGATTAATGGGTCTGTCACTGACTCTTGATGAATGGATGCGGCTAGATTCCGGCGATATTGGCGATGAAGATCAAATTAGT GAGCGAACTTCTAAGATACTTGCTGCCCATCATGCTAGCTCCTTGGACTCGATTCGAGGAGGGTCAAAAGGGGGGAGAGGACGTGGAAAGGGATCTGGTA GAAAGTGTGGTTTGCTGGGGAATAACTTTACTGTAGCACTGATGGTGCAACTTCGCGATCCTCTTAGAAATTATGAACCTGTAGGTACACCAATGCTTGC TCTGATTCAAGTGGAGAGAGTGTTTGTCCCACCAAAGCCAAAAATATACTGCAAGGTGTCAGAGTTAAGAAACAACGATGAAGAAGATGATGAGTCAGAG TCAGTGGTGAAGCAGGAGGTTGAGAAGCAGACAAGCGAAAAGGCTCTGGAGGAAGAAGGAATTCCTCAGTACCAAATCACAGAAGTGCATGTTGCTGGTA TGAAGTCTGAGCCTGGCAAGAAGAAGCTATGGGGTACCACATCTCAGCAACAATCTGGTTCTCGTTGGCTGCTTGCTAATGGAATGGGGAAGGGTAATAA GCATTCGACTACAAAATCCAAGGGTGTTTCTACAAAATCAGCACCCCCACTGACAACAAAGGTGCAGCGTGGTGACAGTTTATGGAGCGTCTCATCTCGT TTTCATGGTACTGGTGCAAAATGGAAGGAACCCCATAAAAGGAATCCGAATGTGATTTTTCCAAATTAA
AA sequence Show only first row Show all	>Potri.006G145500.2 pacid=42767132 polypeptide=Potri.006G145500.2.p locus=Potri.006G145500 ID=Potri.006G145500.2.v4.1 annot-version=v4.1 MMLSKIEGGKKIREDSGNGKLLSEIETISKALYLDKNLSRTASVSTSSNRPRSTGKTQLVDPKSKLDNKHGSEDPSRKDKKSIWNWKPLKAFSNARNREF NCCFSLQVHSIEGFPSTFDNLSVCVHWKRRDGELVTSPVKVFEGIAEFEEKLTHTCVVYGSRSGPHHSAKYEAKHFLLYAALFGAMDLDLGKHRVDLTRL LPLTLEELEEDKSSGKWTTSYKLSGEAKGAKMNVSFGYTVVSDTPIFPRNNQNVNELLRVKLNNARTVKPAPKLCQGDAKSMVYRTGSLPGNYNQQRRAA SRSVEDVKDLHEVLPVSSSELDIPVNILHQKLEDKLDASGYNPEFDVFTENLEPIKQPSICDSDLIKKGTENESENSEFAVIDQGIELSSEEVNIMSADV STVDVKMDTGCHVASEEVTKLHLHDVENSNHEDELGSHDCNFKDEICSKESVMEELESALKSISILESDALDSPEEKEDYTEVKTGTSLSLDDLTESVAN EFLDMLGMEQSPFGSSSESEPESPRERLLRQFEKDALAGGGSLFDFDVDYGDQRECDYYASTASGLGNFSEDFELLSVIQTAEEELMGTQSVSGKARVRM LEDLETESLMREWGLNDKAFDCSPPKSSGGFGSPIDLPPEEPFELPALGEGLGSFLQTKNGGFLRSMNPSIFQKAKNSGHLIMQVSSPVVVPAEMGSGIV DIQQRLASIGIEKLSMQANKLMPLEDITGKTMQQVAWEAGATLEGPERQSLLQQEYTMDDASLGQTSVNDRSSAPRSNKLSSGSLGSETGSEYVSLEDLA PLAMDKIEALSIEGLRIQSGMSDEEAPSNIRAQSIGEISSLQGKGVDISGSLGLEGTAGLQLLDIKDSADDIDGLMGLSLTLDEWMRLDSGDIGDEDQIS ERTSKILAAHHASSLDSIRGGSKGGRGRGKGSGRKCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVERVFVPPKPKIYCKVSELRNNDEEDDESE SVVKQEVEKQTSEKALEEEGIPQYQITEVHVAGMKSEPGKKKLWGTTSQQQSGSRWLLANGMGKGNKHSTTKSKGVSTKSAPPLTTKVQRGDSLWSVSSR FHGTGAKWKEPHKRNPNVIFPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20610			unknown protein		Potri.006G145500 [exp]	0	1
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Potri.001G246100 [exp]	2.00	0.8919
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	3.46	0.8986
AT4G03030			Galactose oxidase/kelch repeat...		Potri.005G221300 [exp]	4.89	0.8886
AT3G42170			BED zinc finger ;hAT family di...		Potri.004G126740 [exp]	6.00	0.8834
AT5G25070			unknown protein		Potri.002G000800 [exp]	6.32	0.8648
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.019G041900 [exp]	7.48	0.8727
AT3G42170			BED zinc finger ;hAT family di...		Potri.004G126780 [exp]	8.36	0.8803
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.009G144300 [exp]	8.94	0.8221
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.001G170200 [exp]	9.16	0.8538
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.011G049400 [exp]	12.24	0.8799

Compare expression of checked genes

Potri.006G145500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.