Plant FIBer expression Database

Potri.006G145600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G35460 538 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G051100
[exp]
632 / 0 AT5G35460 590 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017161
[exp]
557 / 0 AT5G35460 610 / 0.0 unknown protein
Lus10021569
[exp]
531 / 0 AT5G35460 575 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10998 DUF2838 Protein of unknown function (DUF2838)
Representative CDS sequence
>Potri.006G145600.1 pacid=42770369 polypeptide=Potri.006G145600.1.p locus=Potri.006G145600 ID=Potri.006G145600.1.v4.1 annot-version=v4.1
ATGTCGAACAACGAAGAGCATGTGGAGGAAATAAGCACAACAAATGGGGATTCATTTGAAAATGTCAAACAGAGGCTCAAGGACCGATCTAAGAAAGTGG
CTCAAACGAAAGAGATCCTGTCTAAACAGGCTGTTAAGATTGCCAAACAAGCCGGGGAACATGAAAGTTTTATTAACAAGGTGACTCATCTTCTTGGTGT
TCTTGGCTTCGGGGGGTTTTGCTTCCTTCTGGGAGCGAGGCCACAAGATTTTCCTTATGCGTACTGTTTCTTCTATGTCACGTTTGTTCCTCTTCGGTGG
ATATACTATCGGTTCAAGAAATCGCATTATTATCTTCTGGATTTTTGCTATTATGCCAATACTATATTCTTGGTTGACATCCTTTTATATCCAAAGAATG
AAAAGCTTTTCATGGTTTGCTTCTCATTTGCTGAAGGACCATTGGCATGGGCATTGATTGTTTGGCGTTGCAGCTTGGTTTTTAGTTCTGTAGACAAACT
TGTTAGTGCCCTGATACATCTTCTACCTGGGTTGGTTTTCTTCACTATTCGGTGGTGGAATCCTGCAACCTTTGAAGCCATGCATCAAGAAGAAACTCCC
CGCAGAGTCTCATGGCCGTATGGAGTGGAAGACAAATCCTACCTGATGACATGGTTGTTCTGGGTGCCCTTGTTTGCTTATACCCTGTGGCAGGCTCTTT
ATTTTCTCATTGTCGATGTCCTACGTCGGCAGAGGCTCTTAAGAGATCCTGAAGTCATGACTTCTTACAGGGAACTATCAAAAAAAGCCCAGAAAGCAAA
CAATATATGGTGGCAATTGAGTGGTTTGCTTGGGGACCAGCACCGCCTACTAATGTACACTCTGTTGCAAGCTATATTTACTGTGGCAACCATGGCACTC
ACAGTCCCCATCTTCTTGTCCTATGAATTGCATGTGGTTTTCCAAATACTCAAGATTTCAGCAGCTGCATGGAATGGAGGAAGCTTTCTACTAGAGGTAA
TGCCGAGGCAGGTGATTCTCAAAGAGAAGAAGAAATCAGAAATGCAGCCAGTATCTCCTGAGCAAGACCAATCATCAACTGTGGTGGAAAATGCAATGAA
GGCCGAAATCTCGGCTGAGGTGAACGGGTCCTAA
AA sequence
>Potri.006G145600.1 pacid=42770369 polypeptide=Potri.006G145600.1.p locus=Potri.006G145600 ID=Potri.006G145600.1.v4.1 annot-version=v4.1
MSNNEEHVEEISTTNGDSFENVKQRLKDRSKKVAQTKEILSKQAVKIAKQAGEHESFINKVTHLLGVLGFGGFCFLLGARPQDFPYAYCFFYVTFVPLRW
IYYRFKKSHYYLLDFCYYANTIFLVDILLYPKNEKLFMVCFSFAEGPLAWALIVWRCSLVFSSVDKLVSALIHLLPGLVFFTIRWWNPATFEAMHQEETP
RRVSWPYGVEDKSYLMTWLFWVPLFAYTLWQALYFLIVDVLRRQRLLRDPEVMTSYRELSKKAQKANNIWWQLSGLLGDQHRLLMYTLLQAIFTVATMAL
TVPIFLSYELHVVFQILKISAAAWNGGSFLLEVMPRQVILKEKKKSEMQPVSPEQDQSSTVVENAMKAEISAEVNGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G35460 unknown protein Potri.006G145600
[exp]
0 1
AT5G42900 COR27 cold regulated gene 27 (.1.2.3... Potri.002G125900
[exp]
1.00 0.8827
AT3G24520 HSF AT-HSFC1 heat shock transcription facto... Potri.018G079901
[exp]
2.23 0.8477
AT1G22770 FB, GI gigantea protein (GI) (.1) Potri.005G196700
[exp]
9.16 0.8392 GI.1
AT2G27090 Protein of unknown function (D... Potri.009G159000
[exp]
9.53 0.8462
AT1G78600 CO BBX22, DBB3, ST... SALT TOLERANCE HOMOLOG 3, DOUB... Potri.011G105400
[exp]
15.00 0.8320
AT4G32010 B3 HSL1, HSI2-L1, ... VP1/ABI3-LIKE 2, HSI2-like 1 (... Potri.011G043600
[exp]
16.79 0.7959
AT1G68050 ADO3, FKF1 "flavin-binding, kelch repeat,... Potri.010G105700
[exp]
18.02 0.7882 FKF1.1
AT1G24490 ALB4, ARTEMIS ARABIDOPSIS THALIANA ENVELOPE ... Potri.008G182000
[exp]
20.63 0.8463
AT2G17410 ARID ARID/BRIGHT DNA-binding domain... Potri.011G145450
[exp]
20.97 0.8454
AT2G39950 unknown protein Potri.010G192800
[exp]
22.91 0.8207

Potri.006G145600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.