Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20490 2576 / 0 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT1G54560 2304 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT1G17580 2291 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT1G08730 2279 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT5G43900 1943 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G04160 1929 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT2G31900 1925 / 0 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) AT4G28710 1880 / 0 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT2G20290 1679 / 0 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1) AT4G33200 1620 / 0 XI-15, ATXI-I, XI-I MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G199200 [exp] 2626 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.013G043900 [exp] 2368 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.019G013800 [exp] 2340 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.002G254300 [exp] 2053 / 0 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.009G025300 [exp] 2026 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.001G233100 [exp] 2018 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.008G174500 [exp] 1940 / 0 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.006G220000 [exp] 1654 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.002G041800 [exp] 1424 / 0 AT1G08730 1447 / 0.0 MYOSIN XI C, Myosin family protein with Dil domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021570 [exp] 2646 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10017160 [exp] 2517 / 0 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10003315 [exp] 2508 / 0 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10005521 [exp] 2338 / 0 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10022850 [exp] 2013 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 1644 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10023696 [exp] 1574 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10009791 [exp] 1531 / 0 AT1G04160 2103 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Lus10014753 [exp] 1249 / 0 AT3G58160 1289 / 0.0 MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043153 [exp] 1028 / 0 AT5G43900 1250 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00063 [poplar] [flax] Myosin_head Myosin head (motor domain) CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF01843 [poplar] [flax] DIL DIL domain
Representative CDS sequence Show only first row Show all	>Potri.006G145700.1 pacid=42769795 polypeptide=Potri.006G145700.1.p locus=Potri.006G145700 ID=Potri.006G145700.1.v4.1 annot-version=v4.1 ATGGCTACAACAGATAACATTATAGTAGGTTCTCATGTATGGGTTGAAGACCCTGTTTTGGCATGGATTGATGGAGAAGTTCTCAGGATCAACGGTGAAC AAGTTCATGTTCAAGCCACTAATGGGAAAACAGTTGTTGCAAATATCTCCAAAGTATTTCCAAAGGATACCGAAGCTCCTCCTGGAGGTGTAGATGACAT GACAAAGCTGTCATACTTGCATGAACCAGGAGTTCTGCATAACTTGGCTGCAAGATATGAACTTAATGAAATATATACATACACTGGAAATATACTGATT GCAATAAATCCATTCCAAAGATTACCACATCTGTATGATACGCACATGATGGAACAATATAAAGGTGCTGCATTTGGAGAGCTAAGCCCTCATGTTTTTG CAGTTGCAGATGTTGCATACAGGCAAATGATCAATGAGGGAAAGAGTAACTCGATTCTAGTTAGTGGAGAAAGTGGTGCTGGTAAGACTGAGACAACAAA GATGCTTATGCGGTATCTTGCATACATGGGTGGTCGATCAGGCGTGGAAGGGCGAACTGTTGAACAACAAGTGCTAGAATCTAATCCAGTTCTTGAAGCA TTTGGTAATGCCAAAACTGTTAGGAACAACAACTCCAGTCGATTTGGTAAATTTGTTGAGATTCAATTTGACAAGAATGGGAGGATATCAGGAGCAGCTA TACGTACTTATTTACTTGAAAGATCTCGTGTTTGCCAAGTTTCTGACCCTGAAAGAAACTATCACTGTTTTTACCTTCTGTGTGCTGCACCGCTGGAGGA AAGAGAGAGGTATAAGTTGGAAAACCCCAAATCATTCCATTACCTGAATCAGACCAACTGCTATAAGTTAGATGGAGTAAATGATGCTGAGGAATATCTT GCCACCAGAAGGGCAATGGATATAGTTGGCATTAGTGAGGAAGAGCAGGAGGCGATTTTTAGGGTTGTAGCTGCCATTCTGCATCTTGGGAACATTGAAT TTGCAAAAGGAGAGGAAATAGACTCATCTGTTATCAAGGACCAGAAATCTAGGTTCCATCTCAACATGACAGCAGAACTACTAAAGTGTGATGCCAAGAG CTTGGAAGATGCATTGATACAGCGTGTGATGGTAACACCTGAAGAGGTTATTACAAGAACTCTCGATCCTCTTGCTGCGGTTCTTAGCAGGGATGCCTTA GCTAAAACCATTTATTCCCGCTTATTTGATTGGCTTGTGGATAAAATTAACAATTCTATTGGGCAAGATCCAAACTCAAAATCGTTGATTGGAGTTCTTG ATATATATGGTTTTGAAAGTTTCAAGTTCAATAGTTTTGAGCAGTTCTGTATCAACTTTACAAATGAAAAACTTCAACAGCATTTCAATCAGCATGTATT TAAAATGGAACAAGAAGAATATACAAAAGAAGAAATCAACTGGAGCTACATAGAATTTGTTGATAACCAAGATGTGTTGGATCTGATTGAGAAGAAACCT GGGGGTATCATAGCACTTCTTGATGAAGCCTGCATGTTTCCTAAATCTACACATGAAACATTTGCTCAGAAATTGTACCAGACATTTAAAAACAACAAGC GCTTCATCAAGCCTAAGCTTTCTCGTACTAGCTTTACCATATCTCACTATGCAGGGGAGGTGATGTATTTGGCTGATCAGTTCCTAGACAAAAACAAAGA TTATGTAGTGGCAGAACATCAGGATCTTTTGACAGCTTCCAAATGCCCTTTTGCAGCTAGCCTATTTCCTCCACTTCCAGAGGAATCTTCAAAGTCATCT AAATTTTCTTCCATTGGGTCACGTTTTAAGCTACAACTCCAATCTTTGATGGAGACCTTGAATTCTACAGAGCCTCACTATATCAGATGTGTGAAGCCAA ACAATTTACTAAAGCCTGCAATATTTGAGAATGCTAATATTATCCAGCAACTACGCTGTGGTGGTGTTCTTGAGGCAATTAGGATTAGCTGTGCTGGGTA TCCTACAAGGCGGACATTTTATGAGTTTCTTCTCCGTTTTGGTGTTCTTGCTCCAGAAGTTTTGGAAGGAAACCATGATGACAAGGTTGCTTGCCAAATG ATTTTGGATAAAATGGGATTGAAAGGTTATCAGCTAGGCAAGACAAAAGTCTTTCTCAGAGCAGGTCAGATGGCTGAACTGGATGCAAGAAGAACAGAGG TACTTGGAAACGCAGCTAGAACCATACAAAGGCAAATCCGCACGTATATTGCACGCAAAGAGTTCATTTCATTGCGTCGGGCTGCCTTCCATTTACAATC TCATTGCCGAGGTGTATCGGCCCGCATGCTATACGAGGGGTTGCGGCAAGAAGCAGCAGCTTTAAAAATTCAGAAGAATTTCAGGCGACACACTGCCAGG AAAGCCTACTTGACTCTATGTTTGTCAGCGATCTCTTTGCAGACAGGCTTAAGGGCAATGACTGCTCGCAATGAATTCCGATTCAGAAAGCAAACTAAAG CTGCGATTATTATCCAGGCAAAATTGCGTCACCACATAGCATATTCTTATTACAAGAGACTTCAGAAGGCTGCATTAGTTTCTCAATGTGGTTGGAGGCA AAGGGTTGCCCGTAGAGAGCTTAGGAAGCTCAAAATGGCTGCAAAGGAAACAGGGGCCCTTAAAGAAGCAAAAGACAAATTAGAAAAGCGTGTAGAAGAA TTAACATGGCGATTGCAGTTAGAGAAGAGATTGAGGGCTGATCTGGAAGAGGAAAAGGCACAAGAAATTGCCAAGTTACAAGATGCTTTGCGTGAGATGC AAATCCAAGTTGAAGATGCAAATGCCAGAGTAATCAAAGAACGAGAGGAAGCTCAGAAAGCAATTGAAGAAGCACCTCCAATTATTAAGGAGACCCCTGT AATAGTTCAAGACACAGAAAAGGTTGAATCATTAACAGCTGAGGTAGAAAGTTTGAAGGCTTTGCTGCTCTCAGAAAGACAGGCAGCAGAAGAGGCAAGG AAAGCTCATGCAGATGGTGAGGCTAGAAACTCAGAATTGGCTAAGAAACTAGAAGACGCAGCGAAAAAAATGGATCAGCTTCAGGAATCAGTCCAGAGGC TGGAGGAGAAACTTTCCAACTCAGAGTCAGAGAATCAAGTGCTTCGTCAACAGGCACTGACTATGTCACCAACAGGGAAATCTTTGTCTGCACGACCAAA ATCAATGATTATCCAGAGGACTCCTGTGAATGGGAATGTTGCAAATGGAGAGGTGAAGGTGGCATCGGACATAATTCTTGCTGCATCAAATGCTCGTGAA CCAGAATCTGAGGAAAAACCACAGAAATCTCTCAATGAAAAGCAGCAGGAGAACCAGGACCTGCTGATCAAATGTGTATCACAGAACTTGGGATTCTCCG GGGGGAAACCAGTTGCAGCCTGTGTCATATACAAATGTCTTCTTCACTGGAGGTCATTTGAAGTTGAAAGGACAACTGTTTTTGATCGTATCATTCAGAC AATAGCTTCTTCCATTGAGGTCCCTGATAACAATGATGTCTTAGCCTACTGGTTATCTAATTCATCCACATTGCTGCTGCTGCTGCAACACACACTCAAA GCAAGTGGTGCTGCTAGCTTGACACCACAAAGACGGAGAACATCATCTGCTTCTCTTTTTGGGAGAATGTCTCAAGGGCTAAGGGCATCTCCTCAGAGTT CTGGACTTTCATTTCTTAACAGTCGGGGGCTTAGTAGACTGGATGACTTGCGACAGGTTGAGGCTAAGTATCCAGCATTACTTTTCAAGCAGCAACTTAC AGCCTTCCTTGAGAAGATATATGGAATGATACGAGACAATCTGAAGAAAGAAATCTCCCCACTGCTTGGGTTATGCATTCAGGCACCAAGGACTTCCAGG GCAAGTTTAGTGAAAGGTCGCTCTCAAGCTAATGCTGTTGCTCAGCAAGCTTTAATTGCTCATTGGCAAAGCATCGTCAAAAGCTTAAATAGCTACTTGA AGACAATGAAAGCGAACAATGTACCTCCCTTCTTAGTGCGTAAAGTGTTCACTCAAATATTCTCTTTCATCAATGTTCAGTTGTTCAACAGTCTTCTTTT ACGGCGCGAGTGTTGCTCATTCAGTAATGGAGAATATGTAAAAGCTGGTTTGGCTGAATTAGAACAGTGGTGCTATGAGGCAACTGAGGAATTTGCAGGC TCAGCTTGGGATGAATTAAAGCATATAAGACAGGCTGTTGGATTCCTAGTCATACATCAAAAGCCCAAAAAGACCTTGAATGAAATAACAAAAGAGCTTT GCCCGGTGCTGAGCATACAGCAGCTGTACAGGATCAGTACCATGTACTGGGATGATAAATATGGCACCCATAGCGTGTCTTCAGATGTTATATCTAGTAT GAGAGTTATGATGACAGAGGATTCGAACAATGCTGTTAGCAATTCTTTTCTTTTGGACGATGATTCAAGCATCCCATTTTCTGTGGATGACATCTCCAAG TCAATGCAACAAGTAGACATAGCTGACATCGATCCTCCTTCAATAATTCGTGAAAACTCTGGTTTCGGGTTCTTGCTTCCACGCTCTGAGTGA
AA sequence Show only first row Show all	>Potri.006G145700.1 pacid=42769795 polypeptide=Potri.006G145700.1.p locus=Potri.006G145700 ID=Potri.006G145700.1.v4.1 annot-version=v4.1 MATTDNIIVGSHVWVEDPVLAWIDGEVLRINGEQVHVQATNGKTVVANISKVFPKDTEAPPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILI AINPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVADVAYRQMINEGKSNSILVSGESGAGKTETTKMLMRYLAYMGGRSGVEGRTVEQQVLESNPVLEA FGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLERSRVCQVSDPERNYHCFYLLCAAPLEERERYKLENPKSFHYLNQTNCYKLDGVNDAEEYL ATRRAMDIVGISEEEQEAIFRVVAAILHLGNIEFAKGEEIDSSVIKDQKSRFHLNMTAELLKCDAKSLEDALIQRVMVTPEEVITRTLDPLAAVLSRDAL AKTIYSRLFDWLVDKINNSIGQDPNSKSLIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKP GGIIALLDEACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTSFTISHYAGEVMYLADQFLDKNKDYVVAEHQDLLTASKCPFAASLFPPLPEESSKSS KFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNLLKPAIFENANIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLLRFGVLAPEVLEGNHDDKVACQM ILDKMGLKGYQLGKTKVFLRAGQMAELDARRTEVLGNAARTIQRQIRTYIARKEFISLRRAAFHLQSHCRGVSARMLYEGLRQEAAALKIQKNFRRHTAR KAYLTLCLSAISLQTGLRAMTARNEFRFRKQTKAAIIIQAKLRHHIAYSYYKRLQKAALVSQCGWRQRVARRELRKLKMAAKETGALKEAKDKLEKRVEE LTWRLQLEKRLRADLEEEKAQEIAKLQDALREMQIQVEDANARVIKEREEAQKAIEEAPPIIKETPVIVQDTEKVESLTAEVESLKALLLSERQAAEEAR KAHADGEARNSELAKKLEDAAKKMDQLQESVQRLEEKLSNSESENQVLRQQALTMSPTGKSLSARPKSMIIQRTPVNGNVANGEVKVASDIILAASNARE PESEEKPQKSLNEKQQENQDLLIKCVSQNLGFSGGKPVAACVIYKCLLHWRSFEVERTTVFDRIIQTIASSIEVPDNNDVLAYWLSNSSTLLLLLQHTLK ASGAASLTPQRRRTSSASLFGRMSQGLRASPQSSGLSFLNSRGLSRLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSR ASLVKGRSQANAVAQQALIAHWQSIVKSLNSYLKTMKANNVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCYEATEEFAG SAWDELKHIRQAVGFLVIHQKPKKTLNEITKELCPVLSIQQLYRISTMYWDDKYGTHSVSSDVISSMRVMMTEDSNNAVSNSFLLDDDSSIPFSVDDISK SMQQVDIADIDPPSIIRENSGFGFLLPRSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Potri.006G145700 [exp]	0	1
AT2G45540			WD-40 repeat family protein / ...		Potri.002G150000 [exp]	1.00	0.9110
AT4G31570			unknown protein		Potri.018G008600 [exp]	2.64	0.8841
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Potri.009G002400 [exp]	3.87	0.8853
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Potri.007G087200 [exp]	5.09	0.9096
AT5G16300			Vps51/Vps67 family (components...		Potri.008G079700 [exp]	6.70	0.8701
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Potri.004G152400 [exp]	8.30	0.8923	ALPHA.13
AT2G46180		GC4	golgin candidate 4 (.1)		Potri.014G091300 [exp]	9.16	0.8841
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.001G455300 [exp]	9.21	0.8695
AT5G06970			Protein of unknown function (D...		Potri.001G030100 [exp]	11.66	0.8889
AT4G38200			SEC7-like guanine nucleotide e...		Potri.004G208400 [exp]	12.36	0.8794

Compare expression of checked genes

Potri.006G145700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.