Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29830 484 / 6e-174 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 110 / 1e-27 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 110 / 7e-27 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G52820 88 / 3e-19 WD-40 repeat family protein / notchless protein, putative (.1) AT5G67320 87 / 6e-19 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT1G11160 86 / 3e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 86 / 3e-18 TAF5 TBP-associated factor 5 (.1) AT5G23430 86 / 4e-18 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 85 / 6e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 84 / 2e-17 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G045800 [exp] 100 / 4e-23 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.005G148500 [exp] 94 / 8e-22 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 92 / 3e-21 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 88 / 1e-19 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 86 / 3e-18 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 84 / 5e-18 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.008G002300 [exp] 85 / 6e-18 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 84 / 1e-17 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.014G135600 [exp] 81 / 1e-16 AT2G47990 614 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017159 [exp] 515 / 0 AT4G29830 545 / 0.0 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021571 [exp] 511 / 0 AT4G29830 543 / 0.0 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 117 / 4e-29 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 112 / 2e-27 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039636 [exp] 94 / 1e-21 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 90 / 2e-20 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 89 / 4e-20 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 88 / 1e-19 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039597 [exp] 87 / 6e-19 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10029493 [exp] 87 / 6e-19 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.006G145800.1 pacid=42768664 polypeptide=Potri.006G145800.1.p locus=Potri.006G145800 ID=Potri.006G145800.1.v4.1 annot-version=v4.1 ATGAAACTAGCAGGTCTAAAATCAATAGAGAATGCTCACGACGAGTCGGTATGGGCAGCCACATGGATCCCGGCCACCGAGACCCGTCCCGCTCTTCTAA TGACTGGCTCACTCGACGAGACAGTTAAGCTTTGGAAGCCTGACGAGCTCACCCTGGAGCGCACCAACACTGGTCACTGCCTCGGCGTCGTTTCGGTTGC AGCGCATCCTTCCGGGTCCATCGCCGCGTCGGCATCTCTCGATAGCTTCGTTCGAGTGTTCGATGTGGACTCCAACGCCAGCATTGCTACTCTTGAAGCT CCTCCTTCTGAAGTTTGGCAAATGAAGTTCGATCCCAAGGGTACCACTCTAGCAGTTGCTGGTGGTGGTAGTGCATCAGTCCAGCTCTGGGATACAGAAA AATGGAAGTTGATTGCTACCCTGTCGATTCCCCGTCAAGAAGGACCCAAGCCCACCGATAAGAATAGCAGCAAAAAGTTTGTACTATCAGTGGCATGGAG TCCTGATGGGAAACGGGTTGCATGTGGCTCCATGGATGGCACTATTTCTGTTTTTGACGTAGCTCGAGCCAAATTCTTACACCATCTAGAAGGCCACTTC ATGCCTGTGCGGTCTCTTGTGTATTCCCCTGCTGATCCACGGGTGCTCTTTTCTGCATCGGATGATGCCCATGTGCACATGTATGATGCTGAGGGGAAGA GTATGATAGCAGCCTTGTCAGGTCATGCAAGCTGGGTATTAAGTGTTGATGCAAGCCCGGATGGAGCAGCTATTGCAACAGGCTCAAGTGACAAAACTGT AAGGCTATGGGATCTCGGCATGCGGGCTGCTGTGCAAACAATGAGCAACCATGTAGATCAAGTTTGGGGAGTGACATTTCGACCACCAGGCGGTCCTGGT CCCCGTGCAGGCCGGCTTGCAAGTGTGTCAGATGACAAAAGCTTATCACTTTATGATTATTCCTGA
AA sequence Show only first row Show all	>Potri.006G145800.1 pacid=42768664 polypeptide=Potri.006G145800.1.p locus=Potri.006G145800 ID=Potri.006G145800.1.v4.1 annot-version=v4.1 MKLAGLKSIENAHDESVWAATWIPATETRPALLMTGSLDETVKLWKPDELTLERTNTGHCLGVVSVAAHPSGSIAASASLDSFVRVFDVDSNASIATLEA PPSEVWQMKFDPKGTTLAVAGGGSASVQLWDTEKWKLIATLSIPRQEGPKPTDKNSSKKFVLSVAWSPDGKRVACGSMDGTISVFDVARAKFLHHLEGHF MPVRSLVYSPADPRVLFSASDDAHVHMYDAEGKSMIAALSGHASWVLSVDASPDGAAIATGSSDKTVRLWDLGMRAAVQTMSNHVDQVWGVTFRPPGGPG PRAGRLASVSDDKSLSLYDYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29830		VIP3	vernalization independence 3, ...		Potri.006G145800 [exp]	0	1
AT3G22110		PAC1	20S proteasome alpha subunit C...		Potri.006G008800 [exp]	3.74	0.8364	Pt-PAC1.1
AT1G27435			unknown protein		Potri.001G325000 [exp]	3.87	0.8241
AT1G03330			Small nuclear ribonucleoprotei...		Potri.003G014900 [exp]	4.47	0.8101
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Potri.014G109400 [exp]	5.29	0.8189
AT1G51060		HTA10	histone H2A 10 (.1)		Potri.011G131400 [exp]	5.74	0.8070	HTA901
AT2G27020		PAG1	20S proteasome alpha subunit G...		Potri.001G224100 [exp]	6.92	0.8239	Pt-PAG1.1
AT2G31490			unknown protein		Potri.006G077400 [exp]	9.48	0.7943
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Potri.005G025100 [exp]	10.48	0.7797	Pt-RPT5.1
AT3G62920			unknown protein		Potri.014G133600 [exp]	10.77	0.7752
AT5G16660			unknown protein		Potri.019G041700 [exp]	10.81	0.8174

Compare expression of checked genes

Potri.006G145800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.