Plant FIBer expression Database

Potri.006G145900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57070 100 / 4e-22 hydroxyproline-rich glycoprotein family protein (.1)
AT1G72790 76 / 2e-14 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G198900
[exp]
77 / 2e-14 AT1G72790 181 / 7e-50 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008464
[exp]
76 / 3e-14 AT1G72790 110 / 2e-25 hydroxyproline-rich glycoprotein family protein (.1)
Lus10006024
[exp]
71 / 1e-12 AT1G72790 122 / 3e-29 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05553 DUF761 Cotton fibre expressed protein
Representative CDS sequence
>Potri.006G145900.1 pacid=42768633 polypeptide=Potri.006G145900.1.p locus=Potri.006G145900 ID=Potri.006G145900.1.v4.1 annot-version=v4.1
ATGCCTCGCCGTGGCTCCCCATCTCCTCTCCTCAACCTACCACTTCTCATCGTGATCTTACCCATAATTGCATTAATTCTCTTGTTCTTTGCTCTCCCTT
CTCTGCTCTCCCTCACCTCTCACAAAATTCGACCGATCACTAATACTACTGTTATCAAGAGCAGCTGGGACTCACTCTATATTTTTCTAGTCTTGTTTAC
AATTCTCTGTGGCATCTTTGCTAGAAGAAACGACGACGAGTCAACCACTAATGAAGACAATCCCAGCAACCACGACAAATCGAAACCACACTCCGTTTCA
AATGCTCCATGGTTTGCTGATGACTTCTCTGACCCAAAGATCTATGCTAATACCAACAATAGTACACCACTTGGTGGCACAGCGACAGCCGCCACAGGCG
ACAGGTTAAAGATGAACAGTAGATCCTACCCTGATTTAATGCAAGACTCCTTTTGGGAAACTCCTGATGATCGATTTCGGTTCTTTGATGATTTTGAAAT
AAACAAGTACCGCTCACCAATCCACCATCGGAGACATCGGAATGGAGTGTTCGAAGAATCTTGTGTTAAGGATATTCCTGTTGATACTTTTGTAAGTTGC
TCCTCATCAAAGTTACAATCGCCACCACCGCTGAAGACTTCTGCGCCTCCGCCTCCTCCTCCACCGCCTCCTCCGCCAACAACAACGAAGTCCAATCACA
AACAGAAGCGAACATATAGAACACTTCCAAGCGAAATAGAGAAGGCAAATGAAAATGACCTTGAATCCACAAAAATCAAAACTTCGCCACCAACGCCCCC
TCCACCACCACCACGGCATGCAACCCCAGCGCCACCAAAGAAAATGCACGGCAAAAGTGAACGTAAAAGGACGAATGCAACTAAAGAGATAAAGATGGTT
TTGGCTTCTTTATATAGGAAAAAAACGAAGAAACAGAAAACACAAGTTTTACCCAAAAACGATACGCTTCGCTCTCCAAGTGAACCGCCTTCCTCTACTA
GACCTCCACCGCCTCCTCCTCCGCCTCCTCCTCCTCCACCTCCTCCACCGCCACCATCAGTGTTCCACTTTTTATTTAGAAAAAATAGCAAGAGTAAGAG
AATTCATTCCTTTTCTCCACCACCAGCCCCTCCTCCTCCTCCAACGACAAAGAGGTTAGCTAGGCATAAGAGCCAAGTGCCTCTGCCCCCACCGGAACCC
CCAAGGAGGCGAAGATCATCCACCACAGGCCAGCCACCGTTGCCGACAGGGGTGAATAATTTATATGTAGATAATGTGAATAACGGAGGACAATCCCCGC
TCGTTGCAATGCCTCCTCTACCGCCTCCCCCGCCATGTCAGATGCCAGGTTTTCAATTTGTTCCCAGAGGGGATCTTGTTGAGAAACGAAGTGCACAGGG
TTCACGGTGTAGCTCTCCAGATTCGGAGGAGGTTGACAAGGAATCAAGCAGACAGACAGTCAACAAAACGGACGGTAAGGATGGGATTGGTGGGCCCTCT
TTTTGTCCCAGCCCTGATGTTAATATGAAAGCAGACACTTTTATTGCCAGGCTAAGAGATGGGTGGAGGCTGGAGAAGATAAATTCTTTGAGAGAGAAAG
GAAGTGGGGACCATGGCCCAGGTACAGATCCAACAAAAATCTGA
AA sequence
>Potri.006G145900.1 pacid=42768633 polypeptide=Potri.006G145900.1.p locus=Potri.006G145900 ID=Potri.006G145900.1.v4.1 annot-version=v4.1
MPRRGSPSPLLNLPLLIVILPIIALILLFFALPSLLSLTSHKIRPITNTTVIKSSWDSLYIFLVLFTILCGIFARRNDDESTTNEDNPSNHDKSKPHSVS
NAPWFADDFSDPKIYANTNNSTPLGGTATAATGDRLKMNSRSYPDLMQDSFWETPDDRFRFFDDFEINKYRSPIHHRRHRNGVFEESCVKDIPVDTFVSC
SSSKLQSPPPLKTSAPPPPPPPPPPPTTTKSNHKQKRTYRTLPSEIEKANENDLESTKIKTSPPTPPPPPPRHATPAPPKKMHGKSERKRTNATKEIKMV
LASLYRKKTKKQKTQVLPKNDTLRSPSEPPSSTRPPPPPPPPPPPPPPPPPPSVFHFLFRKNSKSKRIHSFSPPPAPPPPPTTKRLARHKSQVPLPPPEP
PRRRRSSTTGQPPLPTGVNNLYVDNVNNGGQSPLVAMPPLPPPPPCQMPGFQFVPRGDLVEKRSAQGSRCSSPDSEEVDKESSRQTVNKTDGKDGIGGPS
FCPSPDVNMKADTFIARLRDGWRLEKINSLREKGSGDHGPGTDPTKI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G57070 hydroxyproline-rich glycoprote... Potri.006G145900
[exp]
0 1
AT3G07180 GPI transamidase component PIG... Potri.002G244801
[exp]
5.47 0.7981
Potri.003G014056
[exp]
6.63 0.7986
AT4G19600 CYCT1;4 Cyclin family protein (.1) Potri.010G090400
[exp]
11.66 0.7751
AT1G13450 Trihelix GT-1 GT-1, Homeodomain-like superfa... Potri.008G179700
[exp]
15.42 0.7674
AT1G44820 Peptidase M20/M25/M40 family p... Potri.002G085400
[exp]
16.61 0.7828
AT3G03210 unknown protein Potri.004G080600
[exp]
20.12 0.7745
AT3G07180 GPI transamidase component PIG... Potri.002G245000
[exp]
23.55 0.7862
AT5G49950 alpha/beta-Hydrolases superfam... Potri.004G223100
[exp]
27.74 0.7355
AT1G27410 DNA repair metallo-beta-lactam... Potri.013G121700
[exp]
29.73 0.7190
AT4G15240 Protein of unknown function (D... Potri.017G039500
[exp]
30.00 0.7702

Potri.006G145900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.