Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29820 291 / 4e-101 CFIM-25, ATCFIM-25 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1) AT4G25550 225 / 3e-75 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143300 [exp] 231 / 1e-77 AT4G25550 385 / 9e-139 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) Potri.012G140301 [exp] 121 / 3e-35 AT4G25550 208 / 5e-70 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027624 [exp] 239 / 1e-80 AT4G29820 228 / 3e-76 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1) Lus10014987 [exp] 231 / 3e-77 AT4G25550 383 / 8e-138 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) Lus10011944 [exp] 208 / 3e-68 AT4G29820 207 / 1e-67 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1) Lus10038867 [exp] 132 / 4e-38 AT4G25550 245 / 1e-82 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF13869 [poplar] [flax] NUDIX_2 Nucleotide hydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G146400.6 pacid=42767937 polypeptide=Potri.006G146400.6.p locus=Potri.006G146400 ID=Potri.006G146400.6.v4.1 annot-version=v4.1 ATGGGTGATCATTCAGTAACTGTAACTGACAATAACAATCATCAAAGCACTGTAATAGAAATATATCCTCTGGGTAGTTATTACTTTGGATCCAAAGACC CTATTGCTTTCAGGGATGAGACTATAGCTGACCGTGTCCAAAGAATGAAATCCAACTTTAGTGCTCGTGGACTGAGGACTTCTGTGCAAGCTGTTATGCT GGTTGAGCTGTTTAAACATCCCCATCTTTTGCTATTGCAAGTAAGAAATGCTTTCTTTAAGCTACCTGGTGGTCGATTAAGACCAGGTGAATCAGATATT GATGGATTGCAACGTAAGCTATCAAGAATGCTTTCTGTGAATGAAGATGAAACTGATCACTGGGAGGTGGGAGATTGCCTTGGAATGTGGTGGAGGTCTG ACTTTGAAACCTTGTTGTATCCGTACTTGCCCCCTAATCTCAAAGTGCCTAAGGAATGCACGAAACTCTACGTTGTAAAGTTACCAGCCAGTCGAAAGTT CATTGTACCAAAGAACCTTAAACTGCTTGCAGTTCCTTTATGCCAAGTTCATGAAAATCATAAGACATATGGACCAGTAATATCAGGAGTTCCGCAGTTG CTATCAAAATTCTCCTTCAACATCAACTATTGA
AA sequence Show only first row Show all	>Potri.006G146400.6 pacid=42767937 polypeptide=Potri.006G146400.6.p locus=Potri.006G146400 ID=Potri.006G146400.6.v4.1 annot-version=v4.1 MGDHSVTVTDNNNHQSTVIEIYPLGSYYFGSKDPIAFRDETIADRVQRMKSNFSARGLRTSVQAVMLVELFKHPHLLLLQVRNAFFKLPGGRLRPGESDI DGLQRKLSRMLSVNEDETDHWEVGDCLGMWWRSDFETLLYPYLPPNLKVPKECTKLYVVKLPASRKFIVPKNLKLLAVPLCQVHENHKTYGPVISGVPQL LSKFSFNINY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.006G146400 [exp]	0	1
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Potri.001G018800 [exp]	1.00	0.8784
AT1G51940			protein kinase family protein ...		Potri.008G187500 [exp]	4.00	0.8627
AT5G54855			Pollen Ole e 1 allergen and ex...		Potri.011G137100 [exp]	5.19	0.8483
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Potri.018G090400 [exp]	5.91	0.8522
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Potri.012G007400 [exp]	6.92	0.8468
					Potri.009G170400 [exp]	7.07	0.8573
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Potri.004G174900 [exp]	7.34	0.8158	RAC4.3
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.005G130800 [exp]	8.24	0.8575
AT1G27050	HD	ATHB54	homeobox protein 54 (.1)		Potri.010G034500 [exp]	8.94	0.8479
AT3G55820			Fasciclin-like arabinogalactan...		Potri.008G065101 [exp]	9.16	0.8542

Compare expression of checked genes

Potri.006G146400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.