Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19390 1068 / 0 unknown protein AT4G29790 1061 / 0 unknown protein AT5G22450 204 / 4e-53 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G056400 [exp] 2016 / 0 AT2G19390 1022 / 0.0 unknown protein Potri.006G146700 [exp] 379 / 6e-123 AT4G29790 203 / 2e-60 unknown protein Potri.008G020600 [exp] 409 / 2e-121 AT5G22450 543 / 2e-172 unknown protein Potri.004G203500 [exp] 380 / 2e-111 AT5G22450 958 / 0.0 unknown protein Potri.010G238400 [exp] 377 / 7e-110 AT5G22450 513 / 8e-161 unknown protein Potri.009G164400 [exp] 355 / 1e-102 AT5G22450 952 / 0.0 unknown protein Potri.003G172800 [exp] 76 / 4e-14 AT3G04280 76 / 2e-16 response regulator 22 (.1.2.3) Potri.003G172866 [exp] 72 / 1e-12 AT3G04280 85 / 2e-19 response regulator 22 (.1.2.3) Potri.001G055650 [exp] 58 / 3e-08 AT4G29790 57 / 2e-08 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004878 [exp] 224 / 2e-59 AT5G22450 916 / 0.0 unknown protein Lus10020607 [exp] 223 / 7e-59 AT5G22450 916 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G146600.1 pacid=42769657 polypeptide=Potri.006G146600.1.p locus=Potri.006G146600 ID=Potri.006G146600.1.v4.1 annot-version=v4.1 ATGGCAACATCTAGTAAGTTCGATATGTCTTCTGATAGCCCGGATAGGCCGATATACTCTAGTGGCCATCGTGGATCCCACTTAGCTGCTCAGATGGACA GATCGAGTAGCTTTCGTGAGAGTATGGAGAATCCAATCCTATCTTCTGTCCCGAACATGGCTCGAAGTAGTGCTGTGGTAGCGCAGGGAGACGTGGTGAA CTTCTTCCAATGCATGCGTTTTGATCCAAAGGTGGTGGCTGCAGACCATAAATCTAGTCGTCAAGGGGACTTTAAGCGACACATGAATGCTGCTCTTGGA ATTTCAGCAGATGACTCTTCTGGTTCTTTGAAAGGCAAGGTGGTATTGTCTCCCTCACCTGAAGAAATCAAGCGAGTAAGAGATGGTCTGCGTGGAAGCT CTGCCAAGGGCAGGGAACGTGTGAAGATTTTCACTGAAGCCTTGTCTGCATTCAACAAGCTCTTCCCAACCATACCGTCAAGGAAGAGGTCTAGATTAGA AGGTTATTCTAATGATAGGCCTAATGCTTCAGTATCAAGCGATCGGTCGGTCCTTGTTCCAAGCCTGGGTAAAATGGGAATTCAAAATCATTCTGCCACC AGTGGTTTTGAACTTGAACAGCAAAAGTCAGAAGAACGGACCAAAAATATTGTTCCAAACAAGCGCACACGAACTTCTTTGGTGGATGTGCGGGGTAATG CTCTGGTCAGGCCATCTGGTACTGTTGACAGAGACAGGGAAATGCTAAGGCTTGCAAATAGTGGTGCTGTTCAAGGTGAGGATCGAAGTTTATCAATTGG TGTTGATGGTTGGGAAAAGACAAAAATGAAGAAGAAGCGTTCTGGGATAAAGCCAGATGTTGCTTCAAACATGGTGTCAACTAAACCCTCAGATGGCTAT CGGGAATCAAAACAGGGAGCGCTGCAAAGACCTGGTACTGATGCTCGTTCAAGATTGAATATTGATTCCCATGGGTTCAGGCCTGGAGTTTCTAATGGTG CTGTTGGAGTTGGAAAAATAGATGGTATCTCACAACCAACAGGCTTGAGCGTGCGATCGATGACCCCTAGGACTGACCTGGAGAACAGTTCTCTTCTAAA TGATAGGAGAGAACGCCCTCTTGGTTCAGATAAGGAAAGGGTGAATATCAGAGCTGTTACCAAGGCTGTTCGGGATGATTTTAATTCTGCTAGTCCCACT TCCAGTGCAAAAATGAATCCGTCCATTCGGGCTCCCCGATCAGGTTCAGGCATTATGCCCAAGTTGTCCCCAGTTGTCCATAGAGCAACTGCTCCCAATG ATTGGGAGCTCTCTCATTGTACGAACAAGCCGCCTGCTGTTGGAGCTAACAACCGCAAACGCACAGCATCTGCTCGGTCTTCGTCTCCACCTGTTGCTCA CTGGGCTGGTCAGAGGCCACAGAAGATCTATCGAACAGCTAGAAGAACAAATTTGGTTCCCATTGTTAACAATGATGAAAGTCCCACTTTGGATAGTGTA TCTGATGTTTCAGGTAATGAAATTGGGGTGGGATTTGCCAGGCGCTTGAGCGGCAATTCTCCTCAGCAAGTTAAATTAAAAGGTGACACTTTATCGTCAG CTGTTTTATCAGAAAGTGAAGAATCAGGGGCTACAGAGGTTAAATCTAAAGATAAGAGCAGAAAGTCTGATGAGATAGATGAGAAAGCTGGGCAGAATGT TCAAAAGATATCACCTTTGGGCCTTCCATCAAGAAAGAACAAGCTGGTTTCAGGTGAAGATATTGGAGATGGTGTTCGCAGGCAAGGGAGGACTGGGAGG GGTTTTACTTCAACAAGGTCTCTTGTGCCAACAGCAGTTGAGAAACTGGGCAATGTTGGAACAGCAAAACAGCTTAGAAGTGCCAGACTTGGTTTTGATA AAAATGAAAGCAAGACAGGCCGTCCTCCAACCAGAAAACTCTCTGATCGTAAGGCTTATACACGCCAAAAGAATACAACAGTCAATGCAACAGCAGATTT TCTTGTTGGTTCAGAAGATGGGCATGAAGAGCTATTGGCTGCTGCAAGTGCTGTTATTAATCCTGGCCTAGCCCTTTTGAGCTCATTTTGGAGGCAAATG GAGACATTCTTTGGTTTTATATCTGATGTAGACATTGCTCACTTGAAACAACAGGGAAGTATTGTGTTTACTGCACCGTCAGCAACACCAGTCCATTCTG ATGCAAACAACTACAGTACTGTCCCTAATGGGTATGGGTTATTTGAACATGATAGGGAGGTTGAGCTTGAGCTTGCTGCTGAAACTAGGACTTCAGAACT TCTTCCAGATCAGTTAATGCCTGTAGATAGAGAAATTCCCCTTTCTCAGTTACTCTTGGCAGCCCTGACCTCAGAGGAAGATTGTACCCTTGGAAATGCA GACCTGGAATTTGATGCATATGGAACTGATTTCGAGCTACATGAGGAGTTGGAATCAAATTGTGTGAATCACCTAGATAATTTTCAGTTTTCTGGACATG TTGCATTTAGTGGTTGCAAGGTGAGTGGGAAGCCAGACCACGACGAGACAGATAATGATATTTCAGGCATCCCAAACATGGGTATTGACTCAAGCTTCAG AAATACCATAAATGGTGTCCTTTCAGACCATGCATTGGTACCAGGGATGGCCTGTTCCAAATTTCAATATGATAATATGAAAATAGAAGAAAAACTTCGT TTGGAGGTTCTTAGTCTGGGAATTTTTCCTGAATCAATGCCTGACATGCCGATGGATGATGAAGGAATCTGTGGGCACATCAGCAAATTAGAGGAGAATC AACATGGGCAGGTTTCAAGGAAGAAAGGTTTATTAGACAAGCTGTTGAAACATGCCTCAGAAATGAAAGAACTCCAAGAAAAGGAATTTGAACAACGTGC TCATGACAAACTCGTCACAATGGCTTATGAAAAGTACATGACTTGTTGGGGTCCTAATGCCACTGGTGGGAAGAGTTCCAGTAGCAAAATGGCCAAGCAA GCTGCCTTAGCATTTGTTAAACAAACTTTAGAGCGATGTCATAAATTTGAAGTTACAGGAAACAGCTGCTTCAGTGAGCCCTCCTTTAGGGATATGTTCC TTTCTGGGACTGCCCGCCTAAATGGTGCACAATCAGTGGATACTCCTACTGATGGTGAATCTGCAAAGTTGTATGGCAATACCTCAACCCGCTCTTTGGA AGCCAGAGTTTCAGCTTCCATGGGTTCACAGCCAAGTCCTCGAACTTTACATGTGGGTCAGAATGGGGATAGCCACATCTCAAATCCTTCTGATCTACTT CCACCTGTTAATCGCTTATCGGAACAAATTACTGGTAAGGAAGATACGTGGTCAAACAGGATGAAGAAGAGGGAGTTGTTGCTTGATGATGTTGTTGGTA GCCCATCAAGTGCTCCATCAGGAATAGGAGGTTCGCTATCGAGCAGTACAAAAGGAAAGAGGAGTGAGAGAGACAGGGAAGGAAAGGGGCACAACAGAGA GGTTTTATCTAGAAACGGATCTAATAAAATTGGTCGACCAACATTATCTAATCAAAAGGGGGAGCGGAAAACTAAAACGAAGCCCAAGCAAAAAACAACT CAACTGTCTGTTTCTGTGAATGGCCTTGTTGGCAAGATATCGGAGCAACCTAAAACAACTTTGCCTTCCAAGGCAAAGTCAAGTGAAAACAACAGTAATA GCAAAGCAAAGGAAAAGGATAGGTTTGGCTTGGATGTGTTGGATGATGCTATTGATTTGTCCAACCTGCAGCTGCCAGGAATAGATGTATTAGATGACAG CCAAGGGCAGGATCTGGGTTCTTGGCTGAACATTGATGATGATGGATTACAAGAGCATGGTGACATTGATTTCATGGGCCTTGAAATTCCAATGGATGAC CTTTCAGATCTAAATATGATGGTTTGA
AA sequence Show only first row Show all	>Potri.006G146600.1 pacid=42769657 polypeptide=Potri.006G146600.1.p locus=Potri.006G146600 ID=Potri.006G146600.1.v4.1 annot-version=v4.1 MATSSKFDMSSDSPDRPIYSSGHRGSHLAAQMDRSSSFRESMENPILSSVPNMARSSAVVAQGDVVNFFQCMRFDPKVVAADHKSSRQGDFKRHMNAALG ISADDSSGSLKGKVVLSPSPEEIKRVRDGLRGSSAKGRERVKIFTEALSAFNKLFPTIPSRKRSRLEGYSNDRPNASVSSDRSVLVPSLGKMGIQNHSAT SGFELEQQKSEERTKNIVPNKRTRTSLVDVRGNALVRPSGTVDRDREMLRLANSGAVQGEDRSLSIGVDGWEKTKMKKKRSGIKPDVASNMVSTKPSDGY RESKQGALQRPGTDARSRLNIDSHGFRPGVSNGAVGVGKIDGISQPTGLSVRSMTPRTDLENSSLLNDRRERPLGSDKERVNIRAVTKAVRDDFNSASPT SSAKMNPSIRAPRSGSGIMPKLSPVVHRATAPNDWELSHCTNKPPAVGANNRKRTASARSSSPPVAHWAGQRPQKIYRTARRTNLVPIVNNDESPTLDSV SDVSGNEIGVGFARRLSGNSPQQVKLKGDTLSSAVLSESEESGATEVKSKDKSRKSDEIDEKAGQNVQKISPLGLPSRKNKLVSGEDIGDGVRRQGRTGR GFTSTRSLVPTAVEKLGNVGTAKQLRSARLGFDKNESKTGRPPTRKLSDRKAYTRQKNTTVNATADFLVGSEDGHEELLAAASAVINPGLALLSSFWRQM ETFFGFISDVDIAHLKQQGSIVFTAPSATPVHSDANNYSTVPNGYGLFEHDREVELELAAETRTSELLPDQLMPVDREIPLSQLLLAALTSEEDCTLGNA DLEFDAYGTDFELHEELESNCVNHLDNFQFSGHVAFSGCKVSGKPDHDETDNDISGIPNMGIDSSFRNTINGVLSDHALVPGMACSKFQYDNMKIEEKLR LEVLSLGIFPESMPDMPMDDEGICGHISKLEENQHGQVSRKKGLLDKLLKHASEMKELQEKEFEQRAHDKLVTMAYEKYMTCWGPNATGGKSSSSKMAKQ AALAFVKQTLERCHKFEVTGNSCFSEPSFRDMFLSGTARLNGAQSVDTPTDGESAKLYGNTSTRSLEARVSASMGSQPSPRTLHVGQNGDSHISNPSDLL PPVNRLSEQITGKEDTWSNRMKKRELLLDDVVGSPSSAPSGIGGSLSSSTKGKRSERDREGKGHNREVLSRNGSNKIGRPTLSNQKGERKTKTKPKQKTT QLSVSVNGLVGKISEQPKTTLPSKAKSSENNSNSKAKEKDRFGLDVLDDAIDLSNLQLPGIDVLDDSQGQDLGSWLNIDDDGLQEHGDIDFMGLEIPMDD LSDLNMMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19390			unknown protein		Potri.006G146600 [exp]	0	1
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.008G195900 [exp]	1.73	0.9205
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Potri.017G092600 [exp]	2.44	0.9008
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.001G157300 [exp]	2.82	0.9116
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.013G085000 [exp]	4.00	0.8883
AT5G49960			unknown protein		Potri.013G128100 [exp]	4.12	0.8614
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.010G213700 [exp]	4.24	0.8856
AT5G22450			unknown protein		Potri.009G164400 [exp]	4.47	0.8585
AT5G47690			binding (.1.2.3)		Potri.016G005400 [exp]	6.00	0.8726
AT1G24300			GYF domain-containing protein ...		Potri.001G326700 [exp]	7.74	0.8875
AT4G01020			helicase domain-containing pro...		Potri.017G050100 [exp]	8.48	0.8470

Compare expression of checked genes

Potri.006G146600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.