Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19400 756 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G33080 753 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT4G14350 648 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT3G23310 645 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT2G20470 612 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G03920 600 / 0 Protein kinase family protein (.1) AT5G09890 579 / 0 Protein kinase family protein (.1.2) AT1G30640 563 / 0 Protein kinase family protein (.1) AT5G62310 266 / 5e-78 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G45160 257 / 4e-75 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G224800 [exp] 803 / 0 AT4G33080 832 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) Potri.010G070600 [exp] 642 / 0 AT4G14350 894 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.005G226700 [exp] 639 / 0 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.011G157000 [exp] 639 / 0 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.008G167800 [exp] 639 / 0 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.002G036200 [exp] 630 / 0 AT2G20470 857 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G125800 [exp] 593 / 0 AT5G09890 828 / 0.0 Protein kinase family protein (.1.2) Potri.014G028900 [exp] 579 / 0 AT5G09890 796 / 0.0 Protein kinase family protein (.1.2) Potri.012G044700 [exp] 261 / 6e-76 AT3G17850 1531 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021176 [exp] 636 / 0 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10011814 [exp] 635 / 0 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10003541 [exp] 630 / 0 AT2G20470 850 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10033911 [exp] 628 / 0 AT2G20470 831 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10005707 [exp] 595 / 0 AT5G09890 853 / 0.0 Protein kinase family protein (.1.2) Lus10042650 [exp] 592 / 0 AT5G09890 857 / 0.0 Protein kinase family protein (.1.2) Lus10031332 [exp] 257 / 2e-74 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10005470 [exp] 251 / 2e-73 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10027196 [exp] 249 / 9e-72 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038912 [exp] 249 / 1e-71 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00433 [poplar] [flax] Pkinase_C Protein kinase C terminal domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G146900.1 pacid=42767196 polypeptide=Potri.006G146900.1.p locus=Potri.006G146900 ID=Potri.006G146900.1.v4.1 annot-version=v4.1 ATGGAGGAGGATGATCGTCTTAACAAAGCGAAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAAGGTGGGGATCAGGTGGGGTCGAGCTTGACCTTGGAGA GGGTAGCTGCTGCAAAGATCTTCATTGAGAATCATTACAAGGCTCAGATGAAACACATCCAGCAACGCAAAGAAAGGCGCTTAGAGCTGAAAAAGCAGTT GGCATCTTCCCAAGTTTCTGAAGAGGAACAAATTAACATACTGAAGGATTTAGAGCACAAGGAAACACAGTATATGCGACTTAAAAGGCACAAGATTTGT GTTGATGATTTTGACCTTTTGACAATAATAGGCAGAGGGGCATTTGGAGAGGTTAGGTTATGCAGGGAGAAGAAGTCAGGCGACATCTATGCTATGAAAA AGTTGAAGAAGTCAGAAATGCTTAGTAGGGGGCAGGTCGAGCATGTCAAAGCTGAAAGGAATTTGCTTGCAGAAGTTGCAAGTCACTGTATTGTGAAACT ATACTATTCTTTTCAAGATGCTGAATACTTATACCTGATCATGGAATATCTGCCTGGAGGTGACATCATGACTTTGTTGATAAGAGAAGAGACTTTGACT GAAACCATGGCTAGATTTTACATTTCCCAAAGTGTTCTTGCTATAGAATCTATTCATAAACACAACTACATTCACAGAGATATCAAACCTGACAATCTAT TGTTAGACAAAAATGGTCATATGAAGCTCTCTGATTTTGGTCTTTGCAAGCCTCTTGACTGCACAAATTTATCAGCTATAAATGAAAATGAAGCACTCGA TGATGAAAATTTGAAGGAATCCATGGATGCTGATGGACACTTTCCAGAAGCTGGTGGAAGGCGCTGGAAAAGTCCCCTTGAACAACTACAACACTGGCAG ATAAACAGGAGAAAATTGGCCTATTCCACAGTCGGCACACCAGATTACATTGCTCCAGAAGTGCTGTTGAAGAAAGGATATGGCATTGAGTGTGACTGGT GGTCTCTTGGTGCAATAATGTACGAGATGCTAGTTGGTTATCCTCCATTTTATTCTGATGATCCAGTAACAACTTGCAGAAAGATTGTGCATTGGAGAAA TCACTTAATATTCCCAGAGGAGGCAAGGCTGACACCTGAAGCGAAGGATCTGATCTGTAGATTGCTTTGTGACGTTGATCATAGGCTTGGTACTCTGGGG GCAGACCAAATTAAAGCTCATCCTTGGTTCAAAGATATTGTATGGGACAAACTTTATGAAATGGAGGCAGCATTTAAACCAGAGGTCAATGGGGAGCTTG ATACACAAAATTTTATGAAATTTGATGAGGTTGAACCCCCATCAACAAGAAGAGGATCCGGATCCATGAGGAAGACAATGTTGAATCCTCAAGATCTTAG TTTTGTTGGTTACACGTACAAGAACTTTGATGCTGTGAAAGGGCTACATCATTCTTTTGATGTGAAGAGAAGCTCATTACCGAGGCAGGCATCCACCGAT TCTTGTCACAGTGATTCTGCAGTGGACTACTCATCTAAGGACTCAATTGGTGACTTACACGCACTGACTCTTTCCTCATCAGTAGATGCCTGTCACAGTG AAGAGCTGTCCAATTCCTTACGTGGAAACCATCTGGCATAA
AA sequence Show only first row Show all	>Potri.006G146900.1 pacid=42767196 polypeptide=Potri.006G146900.1.p locus=Potri.006G146900 ID=Potri.006G146900.1.v4.1 annot-version=v4.1 MEEDDRLNKAKEEEEEEEEEEGGDQVGSSLTLERVAAAKIFIENHYKAQMKHIQQRKERRLELKKQLASSQVSEEEQINILKDLEHKETQYMRLKRHKIC VDDFDLLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLSRGQVEHVKAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDIMTLLIREETLT ETMARFYISQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCTNLSAINENEALDDENLKESMDADGHFPEAGGRRWKSPLEQLQHWQ INRRKLAYSTVGTPDYIAPEVLLKKGYGIECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWRNHLIFPEEARLTPEAKDLICRLLCDVDHRLGTLG ADQIKAHPWFKDIVWDKLYEMEAAFKPEVNGELDTQNFMKFDEVEPPSTRRGSGSMRKTMLNPQDLSFVGYTYKNFDAVKGLHHSFDVKRSSLPRQASTD SCHSDSAVDYSSKDSIGDLHALTLSSSVDACHSEELSNSLRGNHLA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19400			AGC (cAMP-dependent, cGMP-depe...		Potri.006G146900 [exp]	0	1
AT1G52320			unknown protein		Potri.003G054800 [exp]	2.64	0.7227
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Potri.006G237700 [exp]	4.24	0.7473
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.019G092800 [exp]	7.41	0.7130
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Potri.003G083700 [exp]	8.00	0.6732
AT1G19170			Pectin lyase-like superfamily ...		Potri.018G062700 [exp]	10.44	0.7614
AT4G36750			Quinone reductase family prote...		Potri.005G126200 [exp]	15.81	0.7152
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.005G074700 [exp]	21.42	0.7028	POR.1,TFCFC
AT3G57880			Calcium-dependent lipid-bindin...		Potri.006G058900 [exp]	24.97	0.7228
AT4G24910			Protein of unknown function (D...		Potri.015G096900 [exp]	25.69	0.7442
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Potri.004G123300 [exp]	26.32	0.6455

Compare expression of checked genes

Potri.006G146900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.