Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57035 674 / 0 U-box domain-containing protein kinase family protein (.1) AT2G19410 671 / 0 U-box domain-containing protein kinase family protein (.1) AT5G61550 428 / 2e-138 U-box domain-containing protein kinase family protein (.1.2) AT5G61560 425 / 5e-138 U-box domain-containing protein kinase family protein (.1.2) AT4G25160 415 / 2e-133 U-box domain-containing protein kinase family protein (.1) AT5G51270 414 / 3e-133 U-box domain-containing protein kinase family protein (.1) AT5G26150 381 / 4e-122 protein kinase family protein (.1) AT5G12000 373 / 5e-119 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G24370 372 / 8e-118 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 370 / 8e-118 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G233000 [exp] 427 / 2e-138 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.006G078500 [exp] 386 / 1e-123 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 386 / 4e-123 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.001G198300 [exp] 382 / 1e-120 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G225300 [exp] 377 / 5e-120 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G061600 [exp] 377 / 8e-120 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G002400 [exp] 373 / 2e-118 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G001700 [exp] 353 / 2e-110 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170742 [exp] 339 / 3e-105 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020185 [exp] 395 / 2e-129 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10035712 [exp] 382 / 2e-124 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 385 / 2e-122 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10037298 [exp] 380 / 1e-120 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 370 / 6e-120 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 377 / 1e-119 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026439 [exp] 367 / 4e-118 AT5G12000 662 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10033340 [exp] 374 / 8e-118 AT1G16760 800 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 368 / 4e-116 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 367 / 6e-116 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G147000.3 pacid=42767001 polypeptide=Potri.006G147000.3.p locus=Potri.006G147000 ID=Potri.006G147000.3.v4.1 annot-version=v4.1 ATGACGGTCGTGGCGGTCGCCGTGACGGGAAGCGAAGGCGTTGGAGGAAGAGGAAGCAGACGGGCTGTTCGATGGGCGGCGGAGAATTTATCGGCGAAGG CGAAGCGTTTGACTTTAGTCCACATCGTGCCTCGGATCACTTGTATACCCAGTCCATGTGGAGGAGATGGTATAGTAATTGAGGAACTTGACGAGAATGT GGTGGCACTGTACTTAGATGAAATGAAAATGAAATTAGAAGATGATATCTTTTTACCATTTAAGAAGTTATGCAAAAGTAGAGTGGAGAAGGTGAAATGG GTTTTGATTTTTTCTTTGTTTTTGATATTTGTTTTTGGGGTATTGAATAGTAATGCTTTTCAGGTGGAAACTGTGGTGATAGAAGACGACAATCCTGCAA CTGGGCTTTTAAGATACGTGCGTGAGTCTGGGATTGATAGTTTAGTATTGGGGTCTTGTTCTTCAAATTGCTTTTTGAGGAAGCTAAAGGGACCAGGGGT ACCCACAACCGTGCTAAAGTGTGCTCCTGAAACGTGTAATGTTCATGTTGTATCTAGACGGAAAATCATCTCAATATCAGCTACTAGCTCAGCCTCTATC GATTCCAAAGTTGAAGGAACCTTTGAATCATCGTCAGTGACAAACCTCAGTCACCTAGATCCGCACATGGGTCTGTCTATGACTCTGGATGTGGGAAGCT GCAATTCCCTAGCTTCTAGAGAATCTGACCAGGCTGAAGTAGAACAACTACAGCTAGAATTACAAAACACCATTATGATGTACAAAAGAGCTTGTGAAGA GCTTGTTCATACTCAGAACAAGGTCCAATTACTTTCTTTGGAGTGCCTTGAGGAGGAAAATAAAGTGAATGCTGCCTTAGAAAGAGAAGAAACTTTGAAG AGAATTGCTGCTGAAGAGAAAGCAAGGTATTTGCAAGCCATAGAGGAGGTTGAGGAAGCAAAAGATTTGCTTGCTAAAGAAGCTAATGGAAGACAGATAG CAGAGCGTAATGCCCTCAATGAGTCCTTAGAGAAACAGAAAATTGTAGATGCAGTCTTCTCGAATGACAGAAGGTATAAAAGGTACACTAAGGATGAGAT AGAGCTAGCAACAGGTTTCTTCTCTGACAGCAATGTTATTGGTGAAGGAAGTTATGGAAAAGTTTACAAATGCAATCTTGATCATACCCCGGTAGCTGTT AAGGTTTTCTGTCCTGATGCAGTTAACAAAAAACAGGAGTTCTTGAGAGAGGTTGAAGTTCTAACGCAGTTGCACCACCCACACCTGGTTCTGCTAGTTG GAGCCTGCCCTGATAATGGTTGCCTGGCCTATGAATACTTGGAAAATGGAAGCCTGGAGGAGAGTATTTTCTGCCGAAATGGAAAACAATCTCTTCCATG GTTTGTTCGGTTCCGTATAGTTTTTGAAGTAGCCTGTGGGCTTGCATTCTTGCACAACTCAAAGCCAGATCCTATTGTCCATAGGGATCTTAAACCGGGT AATATCTTGTTAGACAGAAATTATGTGAGCAAAATTGGAGATGTTGGGCTGGCTAAACTCATTTCAGATGTTGTGCCAGACAACATGACAGAGTACCGAG ATTCTATTCTTGCCGGTACTCTCAACTACATGGATCCTGAGTATCAGAGAACTGGGACTGTCCGACCCAAATCGGATTTATATGCTTTTGGAGTTACAGT TCTCCAAGTGTTAACAGCTCGCCCTCCCGGTGGACTTATATTAACTGTTGAAAATGCTATCATGAATGGCTCATTTACTGACATTTTAGACAAGTCAGTT AAAGATTGGCCACTTGCTGAGACAGAGGAACTGGCAAAAATTGCGCTGAAGTGCTCTAGCCTCAGGTGCAGGGACAGACCAGATCTTGATGCAGAAGTTC TGCCGGTTCTCAGAAGACTTGTTGATGTTGCAGCTGCTAGTGTTGAGGTGGAAAGAGGCAATATTTATGCACCAAGCCACTACTTCTGTCCAATTCTTCA GGACTTAATGGATGATCCATACATTGCTGCTGATGGTTTCACGTATGAGCACAGAGCAATCAAGGCTTGGCTTGATAGACACAATATATCACCAGTGACA AAGCTGAGGTTCCAGCATTCTATCTTAACTCCAAACCACACTTTACGTTCAGCCATACAGGAGTGGAGATCACGTGTGATTATGCAAGTGCCCTAA
AA sequence Show only first row Show all	>Potri.006G147000.3 pacid=42767001 polypeptide=Potri.006G147000.3.p locus=Potri.006G147000 ID=Potri.006G147000.3.v4.1 annot-version=v4.1 MTVVAVAVTGSEGVGGRGSRRAVRWAAENLSAKAKRLTLVHIVPRITCIPSPCGGDGIVIEELDENVVALYLDEMKMKLEDDIFLPFKKLCKSRVEKVKW VLIFSLFLIFVFGVLNSNAFQVETVVIEDDNPATGLLRYVRESGIDSLVLGSCSSNCFLRKLKGPGVPTTVLKCAPETCNVHVVSRRKIISISATSSASI DSKVEGTFESSSVTNLSHLDPHMGLSMTLDVGSCNSLASRESDQAEVEQLQLELQNTIMMYKRACEELVHTQNKVQLLSLECLEEENKVNAALEREETLK RIAAEEKARYLQAIEEVEEAKDLLAKEANGRQIAERNALNESLEKQKIVDAVFSNDRRYKRYTKDEIELATGFFSDSNVIGEGSYGKVYKCNLDHTPVAV KVFCPDAVNKKQEFLREVEVLTQLHHPHLVLLVGACPDNGCLAYEYLENGSLEESIFCRNGKQSLPWFVRFRIVFEVACGLAFLHNSKPDPIVHRDLKPG NILLDRNYVSKIGDVGLAKLISDVVPDNMTEYRDSILAGTLNYMDPEYQRTGTVRPKSDLYAFGVTVLQVLTARPPGGLILTVENAIMNGSFTDILDKSV KDWPLAETEELAKIALKCSSLRCRDRPDLDAEVLPVLRRLVDVAAASVEVERGNIYAPSHYFCPILQDLMDDPYIAADGFTYEHRAIKAWLDRHNISPVT KLRFQHSILTPNHTLRSAIQEWRSRVIMQVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57035			U-box domain-containing protei...		Potri.006G147000 [exp]	0	1
AT1G17450			B-block binding subunit of TFI...		Potri.001G170001 [exp]	3.16	0.8114
AT2G23450			Protein kinase superfamily pro...		Potri.007G034500 [exp]	3.46	0.8238
AT5G59550			zinc finger (C3HC4-type RING f...		Potri.006G087800 [exp]	7.34	0.7884
AT2G45910			U-box domain-containing protei...		Potri.001G239100 [exp]	7.41	0.7798
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G002200 [exp]	7.48	0.7847	Pt-CNGC.2
AT3G55960			Haloacid dehalogenase-like hyd...		Potri.008G068800 [exp]	8.48	0.7817
AT1G67000			Protein kinase superfamily pro...		Potri.008G125500 [exp]	10.39	0.7717
AT1G68580			agenet domain-containing prote...		Potri.010G126700 [exp]	10.81	0.7703
AT3G18620			DHHC-type zinc finger family p...		Potri.007G070600 [exp]	11.31	0.7232
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Potri.003G170600 [exp]	13.60	0.7997

Compare expression of checked genes

Potri.006G147000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.