Plant FIBer expression Database

Pt-NMT1.6 (Potri.006G147500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-NMT1.6
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57020 780 / 0 ATNMT1, NMT1 ARABIDOPSIS THALIANA MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE, myristoyl-CoA:protein N-myristoyltransferase (.1)
AT2G44175 77 / 5e-17 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G066200
[exp]
850 / 0 AT5G57020 784 / 0.0 ARABIDOPSIS THALIANA MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE, myristoyl-CoA:protein N-myristoyltransferase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021577
[exp]
793 / 0 AT5G57020 752 / 0.0 ARABIDOPSIS THALIANA MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE, myristoyl-CoA:protein N-myristoyltransferase (.1)
Lus10017156
[exp]
457 / 6e-150 AT5G57030 801 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0257 Acetyltrans PF01233 NMT Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
CL0257 Acetyltrans PF02799 NMT_C Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain
Representative CDS sequence
>Potri.006G147500.2 pacid=42769044 polypeptide=Potri.006G147500.2.p locus=Potri.006G147500 ID=Potri.006G147500.2.v4.1 annot-version=v4.1
ATGGCTGATAACAATAACAATTCACTACCTGGGTCTTCGAAAGATAACCCTGATCATGATTCTGAGACAAACCCAGTTTCCAAGGAAAATAGTTCGCTCT
CAACTATAGTCCGTAGGTTTAAGGACTCGGTTTCTTTAGGCAAGACACACAAGTTTTGGGAAAGTCAACCTGTTGGTCAATTCAAAGACATTGGTGACTC
AAATCTGCCTGAAGGTCCCATCGAGCCTCCAACCCTGCTTTCTGAAGTTAAACAGGAACCTTACAATCTCCCTAGTCAGTATGAATGGACCACCTGTGAC
ATGGAATCTGATGAGACTTGCGTTGAGGTTTACAATCTCTTGAAGAACAACTATGTTGAGGACGATGAGAACATGTTCAGGTTTAATTACTCGCAGGAGT
TTCTTACATGGGCTTTGCGTCCCCCGGGCTATTATCGAAACTGGCACATTGGAGTTCGTGCCAAAACTTCGAAGAAGCTTGTTGCTTTTATAACAGGCGT
TCCTGCAAGGATTCGGGTGCGTGATGAAGTTGTGAAAATGGCAGAGATTAATTTCTTATGTGTTCATAAGAAGCTTCGATCCAAGAGACTTGCTCCTGTT
ATGATTAAGGAGGTTACAAGGAGGGTTCATTTAGAGAATATTTGGCAGGCTGCTTACACTGCTGGAGTGGTTCTTCCAACACCAATAACAACCTGCCAGT
ATTGGCACAGGTCTTTGAACCCCAAGAAGCTTATTGATGTTGGCTTTTCAAGGCTTGGTGCAAGGATGACAATGAGCCGGACCATAAAACTTTACAAGTT
ACCAGATTCCCCTGCCACCCCTGGATTTAGAAATATGGAACTTCGTGATGTGCCTGCTGTCACGAGGTTGCTAAGAAATTACTTGAGCCAGTTTGTTGTT
GCTCCGGATTTTGATGAAAATGATGTAGAGCACTGGCTTCTTCCAACCGAGAACGTGGTTGATAGCTACTTGGTTGAGAGCCCAGAGACTCATGAGATCA
CCGACTTCTGCAGCTTCTATACTCTTCCATCCTCTATTCTTGGCAACCAGAACCACTCGACATTGAAAGCTGCTTATTCATATTACAATGTTAGCATGAA
GACTCCATTGCTTCAGTTAATGAATGATGCACTGATTGTTGCCAAGCAGAAGGATTTTGACGTTTTTAATGCATTGGATGTCATGCATAACGAGCCTTTC
CTGAAAGAACTGAAATTTGGACCAGGTGATGGGCAACTACACTACTACCTTTACAATTACCGCATAAGGCATGCCTTGAGACCCTCGGAACTAGGGCTAG
TACTCTTATAA
AA sequence
>Potri.006G147500.2 pacid=42769044 polypeptide=Potri.006G147500.2.p locus=Potri.006G147500 ID=Potri.006G147500.2.v4.1 annot-version=v4.1
MADNNNNSLPGSSKDNPDHDSETNPVSKENSSLSTIVRRFKDSVSLGKTHKFWESQPVGQFKDIGDSNLPEGPIEPPTLLSEVKQEPYNLPSQYEWTTCD
MESDETCVEVYNLLKNNYVEDDENMFRFNYSQEFLTWALRPPGYYRNWHIGVRAKTSKKLVAFITGVPARIRVRDEVVKMAEINFLCVHKKLRSKRLAPV
MIKEVTRRVHLENIWQAAYTAGVVLPTPITTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPDSPATPGFRNMELRDVPAVTRLLRNYLSQFVV
APDFDENDVEHWLLPTENVVDSYLVESPETHEITDFCSFYTLPSSILGNQNHSTLKAAYSYYNVSMKTPLLQLMNDALIVAKQKDFDVFNALDVMHNEPF
LKELKFGPGDGQLHYYLYNYRIRHALRPSELGLVLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G57020 ATNMT1, NMT1 ARABIDOPSIS THALIANA MYRISTOYL... Potri.006G147500
[exp]
0 1 Pt-NMT1.6
AT1G50370 AtFYPP1 flower- specific, phytochrome-... Potri.008G003200
[exp]
3.46 0.7120 ATFYPP3.2
AT1G17890 GER2 NAD(P)-binding Rossmann-fold s... Potri.018G101700
[exp]
4.00 0.6535 GER1.3
AT1G72810 Pyridoxal-5'-phosphate-depende... Potri.001G199100
[exp]
6.00 0.6774
AT5G38110 SGA1, SGA01, AS... anti- silencing function 1b (.... Potri.004G094400
[exp]
7.41 0.6520
AT2G01720 Ribophorin I (.1) Potri.010G223500
[exp]
21.54 0.6798
AT5G14040 PHT3;1 phosphate transporter 3;1 (.1) Potri.017G060800
[exp]
22.04 0.6532
AT4G25030 unknown protein Potri.010G219900
[exp]
23.36 0.6693
AT1G20200 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2... Potri.004G176600
[exp]
24.08 0.6802
AT3G62120 Class II aaRS and biotin synth... Potri.014G112400
[exp]
25.59 0.6777
AT5G51050 APC2 ATP/phosphate carrier 2, Mitoc... Potri.012G110700
[exp]
27.69 0.5856

Potri.006G147500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.