Plant FIBer expression Database

Potri.006G147600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G19450 690 / 0 RDS1, DGAT1, ATDGAT, AS11, ABX45, TAG1 TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1, acyl-CoA:diacylglycerol acyltransferase 1, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, membrane bound O-acyl transferase (MBOAT) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G066100
[exp]
868 / 0 AT2G19450 690 / 0.0 TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1, acyl-CoA:diacylglycerol acyltransferase 1, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, membrane bound O-acyl transferase (MBOAT) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017154
[exp]
738 / 0 AT2G19450 697 / 0.0 TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1, acyl-CoA:diacylglycerol acyltransferase 1, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, membrane bound O-acyl transferase (MBOAT) family protein (.1)
Lus10021582
[exp]
731 / 0 AT2G19450 692 / 0.0 TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1, acyl-CoA:diacylglycerol acyltransferase 1, Arabidopsis thaliana acyl-CoA:diacylglycerol acyltransferase, membrane bound O-acyl transferase (MBOAT) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0517 MBOAT-like PF03062 MBOAT MBOAT, membrane-bound O-acyltransferase family
Representative CDS sequence
>Potri.006G147600.9 pacid=42770019 polypeptide=Potri.006G147600.9.p locus=Potri.006G147600 ID=Potri.006G147600.9.v4.1 annot-version=v4.1
ATGGCGGCGTTAGAGTCTCCGGAGAATCATATAAAGGCAACTGCAACATCAACGGCAACAACATCATCATCGACGACGTCGGATCTTAACTTCTCCGTTC
GACGGAGGTCTACTACTGTCACGGATTCGCCTTCGACGGAGATGATGGAATCGGAGGATTTGAAAAGTAATGGTAAAGAATGCGATAAGGTTACGAATGA
GAATCGATCGGATATTAAATTCAATTATCGGCCTTCAATGCCTGCTCATCGTGGTGTTAGAGAGAGTCCTCTTAGTTCTGATGCTATTTTTAAACAAAGT
CATGCAGGTCTCTTCAATCTCTGTATAGTTGTGCTTGTGGCTATAAACAGCAGGCTTATCATTGAAAATATAATCAAGTATGGTTGGTTAATTAACGGTG
GATTTTGGTTTAGTTCAAAATCATTAAGAGACTGGCCCCTGTTTATGTGCTGTCTTAGCCTTCCAGCATTCCCTTTCGCGGCCTATCTTGTTGAGAAGTT
GGCATATCAAAATTATTTACCTCAACTTGTTGTTGTTTTCCTTCATACAATCATCACCACAGGATCACTTTTATATCCAGTTTTAGTAATTCTCAGGTGT
GATTCTGCTTTTCTATCTGGTGTCACGTTGATGCTCTTTTCTTGCATTGTGTGGCTAAAATTGGTATCTTATGCTCATACAAACTCTGATTTGAGAGCAA
TTGCCAAGTCAATAGATAGGGAAGATGTCCCATCCATTTCTCCTTATGTGGGTAATCCTTATGATACTTACTTTAAGAGTTTGGTCTACTTCATGGTGGC
TCCCACATTATGTTACCAGTCAAGCTATCCTCGCACTGAATCTGTTCGAAAGGGATGGGTGGTTCAACAATTTGTCAAGTTAATAATATTTACTGGATTC
ATGGGATTTATCATAGAACAATATATCAATCCTATTGTTAAGAATTCACAGCACCCTTTTAAAGGAAATCTCTTGTATGCCATTGAGAGGGTCTTGAAGC
TCTCAGTTCCTAATTTATATGTATGGCTTTGCATGTTCTACTGCTTTTTCCACCTGTGGTTAAATATACTTGCCGAGCTCCTTTGCTTTGGTGATCGGGA
GTTCTACAAGGATTGGTGGAATGCAAGAACTGTTGAAGAATATTGGAGAATGTGGAATATGCCAGTTCATAAGTGGATGGTTCGCCATATCTATTTTCCA
TGCCTACGGAATAAAATACCGAAGGGGTTAGCTATACTTATTGCCTTCTTAGTTTCAGCTGTATTTCACGAGCTGTGCATTGCTGTTCCCTGCCACGTGT
TCAAGCTCTGGGCATTTATTGGAATTATGTTACAGGTTCCCTTAGTGGTGATCACAAAATTTCTCCAAAATAAGTTCAGAAGCTCCATGGTGGGAAACAT
GATCTTCTGGTTGTTTTTCAGCATTCTTGGTCAACCAATGTGTGTGCTTCTGTATTACCATGACTTGATGAATCGGAAGGGGAAAACTGAATCAAGGTGA
AA sequence
>Potri.006G147600.9 pacid=42770019 polypeptide=Potri.006G147600.9.p locus=Potri.006G147600 ID=Potri.006G147600.9.v4.1 annot-version=v4.1
MAALESPENHIKATATSTATTSSSTTSDLNFSVRRRSTTVTDSPSTEMMESEDLKSNGKECDKVTNENRSDIKFNYRPSMPAHRGVRESPLSSDAIFKQS
HAGLFNLCIVVLVAINSRLIIENIIKYGWLINGGFWFSSKSLRDWPLFMCCLSLPAFPFAAYLVEKLAYQNYLPQLVVVFLHTIITTGSLLYPVLVILRC
DSAFLSGVTLMLFSCIVWLKLVSYAHTNSDLRAIAKSIDREDVPSISPYVGNPYDTYFKSLVYFMVAPTLCYQSSYPRTESVRKGWVVQQFVKLIIFTGF
MGFIIEQYINPIVKNSQHPFKGNLLYAIERVLKLSVPNLYVWLCMFYCFFHLWLNILAELLCFGDREFYKDWWNARTVEEYWRMWNMPVHKWMVRHIYFP
CLRNKIPKGLAILIAFLVSAVFHELCIAVPCHVFKLWAFIGIMLQVPLVVITKFLQNKFRSSMVGNMIFWLFFSILGQPMCVLLYYHDLMNRKGKTESR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G19450 RDS1, DGAT1, AT... TRIACYLGLYCEROL BIOSYNTHESIS D... Potri.006G147600
[exp]
0 1
AT1G62930 RPF3 RNA processing factor 3, Tetra... Potri.006G257300
[exp]
6.24 0.8063
AT4G01710 ARPC5, CRK CROOKED, ARP2/3 complex 16 kDa... Potri.002G136500
[exp]
6.48 0.8072 CRK.2
AT5G17440 LUC7 related protein (.1) Potri.013G084800
[exp]
8.30 0.7605
AT3G46630 Protein of unknown function (D... Potri.014G023200
[exp]
10.58 0.7913
AT5G67580 MYB ATTBP3, TRB2, A... TELOMERE-BINDING PROTEIN 3, TE... Potri.014G004900
[exp]
12.16 0.8037 SMH906
AT4G38240 GNTI, CGL1 N-ACETYLGLUCOSAMINYLTRANSFERAS... Potri.004G206900
[exp]
12.84 0.7939
AT3G55490 GINS complex protein (.1) Potri.008G068100
[exp]
13.22 0.7580 TTN10.1
AT1G56590 ZIP4 ZIG SUPPRESSOR 4, Clathrin ada... Potri.005G010600
[exp]
16.24 0.7937
AT3G30841 Cofactor-independent phosphogl... Potri.004G106200
[exp]
19.89 0.6672
AT5G18920 Cox19-like CHCH family protein... Potri.010G028000
[exp]
24.39 0.7700

Potri.006G147600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.