Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72710 673 / 0 CKL2 casein kinase 1-like protein 2 (.1) AT4G26100 665 / 0 CKL1, CK1 casein kinase 1 (.1) AT5G57015 635 / 0 CKL12 casein kinase I-like 12 (.1) AT2G19470 573 / 0 CKL5 casein kinase I-like 5 (.1) AT1G03930 516 / 0 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT5G44100 516 / 0 CKL7 casein kinase I-like 7 (.1) AT3G23340 511 / 6e-180 CKL10 casein kinase I-like 10 (.1) AT4G14340 498 / 7e-175 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT4G28540 498 / 3e-174 CKL6, PAPK1 casein kinase I-like 6 (.1) AT5G43320 488 / 2e-170 CKL8 casein kinase I-like 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G065900 [exp] 838 / 0 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 697 / 0 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.003G043500 [exp] 678 / 0 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.002G036000 [exp] 517 / 0 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.005G226900 [exp] 515 / 0 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.010G070400 [exp] 513 / 1e-180 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.008G168100 [exp] 513 / 2e-180 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.013G047200 [exp] 499 / 4e-175 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.018G041000 [exp] 484 / 2e-169 AT4G28880 589 / 0.0 casein kinase I-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027628 [exp] 759 / 0 AT4G26100 702 / 0.0 casein kinase 1 (.1) Lus10011940 [exp] 742 / 0 AT4G26100 680 / 0.0 casein kinase 1 (.1) Lus10006879 [exp] 635 / 0 AT1G72710 664 / 0.0 casein kinase 1-like protein 2 (.1) Lus10037621 [exp] 632 / 0 AT1G72710 655 / 0.0 casein kinase 1-like protein 2 (.1) Lus10006018 [exp] 630 / 0 AT1G72710 649 / 0.0 casein kinase 1-like protein 2 (.1) Lus10033913 [exp] 525 / 0 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10022029 [exp] 514 / 0 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10021175 [exp] 514 / 0 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10042570 [exp] 511 / 1e-179 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10014661 [exp] 507 / 5e-178 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.006G147800.1 pacid=42768987 polypeptide=Potri.006G147800.1.p locus=Potri.006G147800 ID=Potri.006G147800.1.v4.1 annot-version=v4.1 ATGGAGCCGCGTGTTGGTAACAAGTTCAGGCTCGGCCGAAAGATCGGCAGCGGCTCCTTTGGAGAGATCTATCTAGGTACGAATATCCAGACTAATGAAG AAGTCGCCATTAAGCTCGAAAACGTCAAAACAAAGCATCCTCAGTTGCTATATGAATCCAAGTTATACAGAATCCTGCAGGGAGGAACTGGTATTCCAAA TGTGAGGTGGTTCGGGGTTGAGGGAGACTATAATGTTCTGGTGATGGATTTGCTTGGACCTAGTCTTGAAGATCTCTTTAACTTCTGCAGTCGGAAACTC TCTTTGAAGTCAGTTCTTATGCTTGCTGATCAGATGATCAACCGTGTCGAGTTTGTTCACTCGAAATCATTTCTTCATCGAGATATCAAGCCAGACAACT TTCTTATGGGCTTGGGAAGGCGTGCAAATCAGGTATACATCATTGACTTTGGTTTGGCAAAGAAATACAGAGATAGTTCAACCCATCAACACATTCCTTA CAGGGAAAATAAAAATTTGACTGGAACTGCTAGATATGCAAGCATGAACACTCACCTGGGCATTGAGCAAAGCCGGAGGGATGATCTAGAATCTCTTGGT TATGTCCTTATGTACTTCCTGAGAGGAAGCCTTCCTTGGCAGGGACTAAAAGCTGGAACTAAGAAACAAAAGTATGAGAAAATTAGTGAAAAAAAGGTTT CTACTTCGATTGAGGCACTGTCTCGGGGTTATCCAACTGAATTTGCCTCTTACTTTCATTACTGCCGTTCACTTCGATTTGATGATAAGCCAGATTATGC TTATTTGAAGAGAATATTCCGCGACCTCTTTATTCGCGAGGGCTTCCAGTTTGATTATGTCTTTGACTGGACAATATTGAAGTATCAGCAATCACAGCTG GCTAATCCTCCAACTCGCGGCCTTGGCCTCGGTGTTGGAACCAGTTCTGGAATGCCACCTCCTATTGTCAGTGCGGATAGACAAACAGGTGGAGAAGAAG TGCGAGCAGCTGGCCAAACAATGGAATCCTCTCGCCGGAGGCTATCAGGACAGATCATAAATGCTGGAAGTTCTTCAAAGCAGAAAAGTCTAGTTGCTAA CGAATCTCCAATTACAAAGGATGCCATGTTACCCAACTCCACTTTTTTGGGCCGATCAAGTGGATCCTCAAGGCGAGCTGCAGCTGTTTCCAGCAGCCGT GATGTATTTGTTGGAAGCGAGTCTGATCCCCAACGGTCTTGCACAACTGAGGCTAGCCCTGGAGCAATACATAAAATTTCTAGCGGGCAAAGAAGTCCTC CTCTTGGATCTTCAGACCCAAGGCGCACTTCATCAAGTAGAAACACCTCTCACATGAAGACATATGAGACCACCCTTAAAGGATTTGAGAGTCTGAATTT TGACAGTGATGAGAAGGCTCATCATTAG
AA sequence Show only first row Show all	>Potri.006G147800.1 pacid=42768987 polypeptide=Potri.006G147800.1.p locus=Potri.006G147800 ID=Potri.006G147800.1.v4.1 annot-version=v4.1 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKL SLKSVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLG YVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALSRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQL ANPPTRGLGLGVGTSSGMPPPIVSADRQTGGEEVRAAGQTMESSRRRLSGQIINAGSSSKQKSLVANESPITKDAMLPNSTFLGRSSGSSRRAAAVSSSR DVFVGSESDPQRSCTTEASPGAIHKISSGQRSPPLGSSDPRRTSSSRNTSHMKTYETTLKGFESLNFDSDEKAHH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.006G147800 [exp]	0	1
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Potri.017G144121 [exp]	3.00	0.8285
AT2G16950		ATTRN1	transportin 1 (.1.2)		Potri.009G138200 [exp]	9.64	0.8441
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Potri.012G068550 [exp]	17.43	0.8378
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Potri.005G209000 [exp]	18.43	0.7960
AT5G44010			unknown protein		Potri.014G192200 [exp]	20.71	0.8418
AT4G18465			RNA helicase family protein (....		Potri.004G052700 [exp]	21.79	0.8374
AT5G61910			DCD (Development and Cell Deat...		Potri.015G106400 [exp]	22.62	0.7991	Pt-BON1.2
AT1G73930			unknown protein		Potri.012G060200 [exp]	25.13	0.7776
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Potri.015G084600 [exp]	31.73	0.7875
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.015G028101 [exp]	32.74	0.8295

Compare expression of checked genes

Potri.006G147800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.