Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56930 159 / 4e-40 C3HZnF EMB1789 embryo defective 1789, CCCH-type zinc finger family protein (.1) AT3G47120 53 / 6e-07 C3HZnF RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G061100 [exp] 50 / 8e-06 AT3G18640 140 / 2e-34 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.003G069700 [exp] 44 / 0.0004 AT5G66840 207 / 2e-60 SAP domain-containing protein (.1) Potri.007G107800 [exp] 44 / 0.0006 AT3G18640 142 / 8e-35 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028950 [exp] 259 / 2e-73 AT5G56930 143 / 2e-35 embryo defective 1789, CCCH-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G148400.1 pacid=42768079 polypeptide=Potri.006G148400.1.p locus=Potri.006G148400 ID=Potri.006G148400.1.v4.1 annot-version=v4.1 ATGGCAGAGACTCCTCTTTTCACTTTTTCTCCACTACGCAAATCGCATCTCAAAAGTCAAACTTATCGCACTCTTGTTCGAATTTTATCGCACCCTCAGC TTTGTCAATTTGTTCCTCCGCCACCAGGTAATGGTGGTGATGGAGGGCCGCATGTGTTGGGAAACCAAGTATGCAGTAGGCATGTGGAGTTGTGCCATGA AAGTTTGCTGGATAAAAATGGCCAAGAAAGAGGGTTTAGTGACACGCAAGCGGTGATCAATGAGGTAGAGAACATAATGGGAATAGAAGAAGATGAGAAC TTGGTGATTGATCAAACTGCTTGTGGAACTGGTTTACAAGATAGAGATTTAATTCAGGCGCAACATTTGCTAATTGATGAGTTAGAGCATCTCATGAAAG GAAACGTGGAGCTTGTTTGTCACAACAATTCTGGCCCTGTGACTAACCGGAATCGGAATGCTGCTGGTGATGTTGTTGCGGTTTCAAACAACCAAGATGA ACATTTTGAGCGCCATCCAGTTGTTATCAAAGAATGCAGGGGTGTCGGCCAGCTACAACTTGATGAAGAAACCCTATGTCAAAATAACAAAATAAGCAGT GAAGTTTCAAAACCAGTTGATAATTGTGAAGAAAGTTCATTGTCGAGGACTAATGGATTGGAAGTAAATAATGAAATGCAACAGAAAGAGATACAATCGG ACAAATCAGTTTGTGCCGATGCCACAATGGGTTATCCTCCTGAAGATGGTGAGATAGAAGAGCGAGAAGTTTCTGGTGAGTTTGAGGTGGATGATGGATC AGTCGATATGTTTTCTGAGGATGCTGTAGCGCCACAGGAGAAGAAAGTTGATGAGAAGCAAGCTTCTGAAGCTATTATTGATAAAAATAGGCTTCCTATT AATGAAAAAAATGAAGCAAACAAGAAGCACTCCTGGTTTTCTTCTTCTATGGCGTACACAGTTGAGAATGCTAAAGATAGAAGAGAAGTGGAAGCCCAAC AACGTTTCTCAAGTGAAATGGCATGTAAACGGAAAGTTGTAACTTATGAAGATCCTATATTAGCTGAAGAGGGTGTCTGGTGTAAGAAACAAAAGAAATG CCATGGAGTCAGGGAGCAAAATGATGGGAGTGCAGCAAAAGACCAAAAAAGAGACAGCAGAGTTAAGGAACAAAAGAAAGGGAATGTTGCCAATGATGGT GTTGGCTGCCCAGTGGTTTGTCCTAACAATCTGGCGTCGTTCACAGAAAATTCAGATCAAACTGCATCTGCAAACCAAGGAATTGTATCGAAAGAAAAGG ATGCTGGTCTATGCAATAAGAAAAAGCGTGGTCCTCCTTCTAAGGAAAAGAAAGCAAAGAAGAAGGAAAAAGAACGAAAAAAACGGGCTGAAAAGAACAG ACAACTTGGTGTTAAAAGGATGAAGTTACTTCCTGTGCTGAATCAGAAACCTGTATCACCCTGCCGTCATTTTCTCAAGGGGAGATGCCGGGAGGGTCAA AAATGCAAATTTTCCCATGATGCAATACCTTTGACAAAATCTGAGCCATGCCATCATTTTGCACGTCACAAATGCATGAAAGGTGACAATTGTCCATATG ATCATCAGCTCTCCAAGTATCCTTGTACAAACTATGTGTCAAAAGGTTATTGTATCAGGGGGGACAGTTGTATGTTTTCACACAAGGAAGATCTTGCATC TACATCAAACGTTTCAAATGTTTGCACTCCTAAGGTGAAGCCTCCATCTTTGCCGAGCACTTCAAATTCTAAGAGGCAACTGGATATTAGTGGAACTTCC AACCAGACTGCCAAAGCCTTGCCTGATTCCACAGGAGTTATTTCTGATGATAGACGTGCTGCACTAAATGTGGCAAAGACTGTACAGAATTTGCCTGCAC TGGTGCCCAAAGGTCTTAGCTTTCTTTCTGGTGGGAAGAAGTCAATGGTTGAATCTAGTCCTAAAACAAGCAGCCCATCTCTGAAGAGTAACGTGTTTGT CAAAGTTGGAAACCAGATAGATCAATGTGCATCCGTCACAGTTCAAAGCTGCAATGAGATTCCTAGGAAAATTCCTTCCGTTGTTGCACCAAAGGGGATA AATTTCCTTTCATTTGGCAAAGCTCCATTGGATAAATGTTCAAGTACTATGAAATTAAAAAGCTTGGCCTTTAATCAGGGAAATGGTGTCAACTTATTTT CATCCAAAAATTTCGCTGTGCACGAAGAAGCTTGCTCATCTTCAAATAAGGATAATAGTGTCCTAGTTGGCAAAGAGACACACCAAAGTGTGTCAAATAT GGCGGCGCATGGGTTGAATAAGATGCTGCAGAAAACTGAACCTACAGCATTTCAAGATGCTTCAGCAGATAGTTTTAGGAGAAACCAGCAGGCTAGCTTG CCTTTAAGTTCTGGTAGCGGTGTTCATGCATCTGTTCAAGAAAGTAAAATTGCATCCAATAAACATGTAGAGTTGAGTGCACTCCAAGGGAGGTTGCCAG CTTCACCGCTTGGTTCAGGTCAATCTTCTGATCAGTTGGCACATGCATGTTTGAAAAACAAACCAATATCTGCTCAGAAGGCACTTATGTCAACACTAGC ATTTGCTACAAAGGTTGAATCTCTAATGAAGATGAATCAGTCCACTGGTGGTGCTTTTGCTGTCAGTAGCATGGTCAGCAAGGAAAGCAGGGATAGTACT ACACCTAGAGGTTTACAGATTGACTCAGAAAAGGCATCAAAAGTTTTGGATTTTTTATCTGGTATTGGTGGTGAAACAAAGCAGTAA
AA sequence Show only first row Show all	>Potri.006G148400.1 pacid=42768079 polypeptide=Potri.006G148400.1.p locus=Potri.006G148400 ID=Potri.006G148400.1.v4.1 annot-version=v4.1 MAETPLFTFSPLRKSHLKSQTYRTLVRILSHPQLCQFVPPPPGNGGDGGPHVLGNQVCSRHVELCHESLLDKNGQERGFSDTQAVINEVENIMGIEEDEN LVIDQTACGTGLQDRDLIQAQHLLIDELEHLMKGNVELVCHNNSGPVTNRNRNAAGDVVAVSNNQDEHFERHPVVIKECRGVGQLQLDEETLCQNNKISS EVSKPVDNCEESSLSRTNGLEVNNEMQQKEIQSDKSVCADATMGYPPEDGEIEEREVSGEFEVDDGSVDMFSEDAVAPQEKKVDEKQASEAIIDKNRLPI NEKNEANKKHSWFSSSMAYTVENAKDRREVEAQQRFSSEMACKRKVVTYEDPILAEEGVWCKKQKKCHGVREQNDGSAAKDQKRDSRVKEQKKGNVANDG VGCPVVCPNNLASFTENSDQTASANQGIVSKEKDAGLCNKKKRGPPSKEKKAKKKEKERKKRAEKNRQLGVKRMKLLPVLNQKPVSPCRHFLKGRCREGQ KCKFSHDAIPLTKSEPCHHFARHKCMKGDNCPYDHQLSKYPCTNYVSKGYCIRGDSCMFSHKEDLASTSNVSNVCTPKVKPPSLPSTSNSKRQLDISGTS NQTAKALPDSTGVISDDRRAALNVAKTVQNLPALVPKGLSFLSGGKKSMVESSPKTSSPSLKSNVFVKVGNQIDQCASVTVQSCNEIPRKIPSVVAPKGI NFLSFGKAPLDKCSSTMKLKSLAFNQGNGVNLFSSKNFAVHEEACSSSNKDNSVLVGKETHQSVSNMAAHGLNKMLQKTEPTAFQDASADSFRRNQQASL PLSSGSGVHASVQESKIASNKHVELSALQGRLPASPLGSGQSSDQLAHACLKNKPISAQKALMSTLAFATKVESLMKMNQSTGGAFAVSSMVSKESRDST TPRGLQIDSEKASKVLDFLSGIGGETKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Potri.006G148400 [exp]	0	1
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Potri.015G095500 [exp]	2.44	0.8804
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.008G011800 [exp]	2.64	0.8730
AT5G64270			splicing factor, putative (.1)		Potri.017G050800 [exp]	3.46	0.8757
AT4G25390			Protein kinase superfamily pro...		Potri.015G134100 [exp]	4.58	0.8506
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.006G208900 [exp]	4.69	0.8857	Pt-SPY.2
AT3G48120			unknown protein		Potri.015G070100 [exp]	6.32	0.8535
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.006G163700 [exp]	6.70	0.8788
AT5G37830		OXP1	oxoprolinase 1 (.1)		Potri.004G091000 [exp]	8.48	0.8182
AT2G24530			unknown protein		Potri.018G005700 [exp]	8.94	0.8580
AT4G11560			bromo-adjacent homology (BAH) ...		Potri.003G127400 [exp]	9.94	0.8623

Compare expression of checked genes

Potri.006G148400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.