Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NFA902
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19480 448 / 9e-158 NFA2, NFA02, NAP1;2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) AT5G56950 438 / 7e-154 NFA3, NFA03, NAP1;3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1) AT4G26110 432 / 6e-152 NAP1;1, ATNAP1;1 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) AT3G13782 288 / 7e-96 NFA4, NFA04, NAP1;4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, nucleosome assembly protein1;4 (.1) AT1G18800 74 / 9e-15 NRP2 NAP1-related protein 2 (.1) AT1G74560 68 / 6e-13 NRP1 NAP1-related protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067800 [exp] 507 / 0 AT2G19480 462 / 4e-163 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G021400 [exp] 300 / 2e-99 AT2G19480 286 / 2e-94 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036200 [exp] 291 / 1e-94 AT2G19480 285 / 3e-92 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036500 [exp] 285 / 2e-92 AT2G19480 280 / 5e-90 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040250 [exp] 291 / 3e-91 AT2G19480 280 / 9e-87 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040700 [exp] 275 / 5e-88 AT2G19480 287 / 7e-93 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.017G080700 [exp] 76 / 2e-15 AT1G18800 292 / 4e-100 NAP1-related protein 2 (.1) Potri.015G062700 [exp] 67 / 1e-12 AT1G18800 324 / 2e-112 NAP1-related protein 2 (.1) Potri.012G069100 [exp] 61 / 2e-10 AT1G18800 325 / 7e-113 NAP1-related protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011957 [exp] 427 / 6e-150 AT2G19480 449 / 2e-158 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011956 [exp] 409 / 2e-142 AT2G19480 422 / 8e-148 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10027615 [exp] 368 / 4e-127 AT2G19480 385 / 3e-134 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10037630 [exp] 359 / 8e-123 AT2G19480 386 / 1e-133 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10015612 [exp] 357 / 2e-118 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10011959 [exp] 310 / 2e-102 AT2G19480 319 / 5e-106 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10001235 [exp] 251 / 4e-81 AT4G26110 250 / 2e-81 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10042106 [exp] 246 / 3e-79 AT4G26110 242 / 1e-77 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10026197 [exp] 230 / 5e-73 AT4G26110 229 / 7e-73 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10001231 [exp] 224 / 2e-70 AT5G56950 229 / 6e-73 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00956 [poplar] [flax] NAP Nucleosome assembly protein (NAP)
Representative CDS sequence Show only first row Show all	>Potri.006G148600.2 pacid=42768945 polypeptide=Potri.006G148600.2.p locus=Potri.006G148600 ID=Potri.006G148600.2.v4.1 annot-version=v4.1 ATGAGTAACGATAAGGATAACTTCAGCATGGCTGATCTCACCGCCGCTTTTAACGACGAGGATAGAGCTGGCCTTGTTAATGCTCTTAAGAATAAGCTAC AGAGTTTGACTGGACAGCACTCTGAATTGCTCGAGAACCTATCTCCGACTGTTAGGAAGCGTGTTGAGGATCTCAGAGAGATCCAGAGTGAACACGATGA ATTAGAGGCAAAATTCTTTGAGGAGAGAGCAGCCCTTGAAGCGAAATATCAGAAATTGTACCAACCATTGTACACTAAGCGATACGATATTGTGAATGGT GTTGCTGAAGTTGAAGCTACAAATGAAGTGGCAATGGATCAAGATGGGGGAAAGGCTGGAGAAGAGAAAGGTGTTCCTGATTTTTGGCTTGTCGCAATGA AGAACAATGAAGTGCTAGCTGAGGAGATTACTGAGCGTGATGAAGGAGCTCTCAAGTACCTTAAAGATATTAAGTGGTGTAGGATAGAGGATCCCAAGGG ATTTAAGCTTGAGTTCTTCTTTGATACTAACCCTTATTTCAAGAACTCTGTTTTGACAAAAACATATCACATGATTGATGAAGATGAGCCCATTCTCGAG AAAGCAATAGGAACTGAGATCGAATGGTATCCAGGAAAATGCTTGACCCAGAAGCTTCTTAAGAAGAAGCCCAAGAAAGGATCCAAGAATGCCAAGCCAA TTACTAAAACTGAAGACTGTGAAAGTTTTTTCAACTTCTTCAGTCCACCACAAGTTCCTGACGATGATGAAGACATAGATGAAGATACTGCTGAGGAATT GCAAAATCAGATGGAGCAAGATTATGACATTGGGTCAACCATTCGAGACAAGATCATCCCCCATGCTGTGTCATGGTTTACCGGGGAGGCTGTTCAGGGG GATGAGCTTGGACTAGATGATGGTGACAATGACGATTATGAAGATATTGATGAGGATGATGACGAGGAGGAAGATGAGGACGATGAAGAAGTTGAAGATG AAGAAGATGAGGATGAGGATGAGGATGAAGGCAAGACCAAAAAGAAGTCATCTGCTGGAAACAAGAAAAGTGGAAGAACACAAGTTGGGGATGGTCAGCA GGGTGAGCGGCCTCCAGAATGCAAGCAGCAGTAA
AA sequence Show only first row Show all	>Potri.006G148600.2 pacid=42768945 polypeptide=Potri.006G148600.2.p locus=Potri.006G148600 ID=Potri.006G148600.2.v4.1 annot-version=v4.1 MSNDKDNFSMADLTAAFNDEDRAGLVNALKNKLQSLTGQHSELLENLSPTVRKRVEDLREIQSEHDELEAKFFEERAALEAKYQKLYQPLYTKRYDIVNG VAEVEATNEVAMDQDGGKAGEEKGVPDFWLVAMKNNEVLAEEITERDEGALKYLKDIKWCRIEDPKGFKLEFFFDTNPYFKNSVLTKTYHMIDEDEPILE KAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEDCESFFNFFSPPQVPDDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAVQG DELGLDDGDNDDYEDIDEDDDEEEDEDDEEVEDEEDEDEDEDEGKTKKKSSAGNKKSGRTQVGDGQQGERPPECKQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.006G148600 [exp]	0	1	NFA902
AT3G05060			NOP56-like pre RNA processing ...		Potri.013G032300 [exp]	5.91	0.8085
AT4G32720		ATLA1	La protein 1 (.1.2)		Potri.006G241800 [exp]	8.24	0.7952
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Potri.006G102200 [exp]	16.61	0.7895
AT5G27120			NOP56-like pre RNA processing ...		Potri.005G045600 [exp]	19.07	0.7599
AT3G12860			NOP56-like pre RNA processing ...		Potri.015G092900 [exp]	19.23	0.7786	NOP56.1
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Potri.018G015200 [exp]	20.63	0.7767	EIF3.5
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Potri.016G024300 [exp]	21.90	0.7640
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.006G044100 [exp]	28.84	0.7318	Pt-NAP57.2
AT1G75335			unknown protein		Potri.019G095600 [exp]	32.74	0.7494
AT3G03060			P-loop containing nucleoside t...		Potri.001G458200 [exp]	34.98	0.7478

Compare expression of checked genes

Potri.006G148600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.