Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19490 536 / 0 recA DNA recombination family protein (.1) AT3G10140 288 / 3e-94 RECA3 RECA homolog 3 (.1) AT3G32920 276 / 8e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G79050 263 / 8e-84 recA DNA recombination family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067900 [exp] 671 / 0 AT2G19490 547 / 0.0 recA DNA recombination family protein (.1) Potri.006G048000 [exp] 308 / 5e-102 AT3G10140 427 / 5e-149 RECA homolog 3 (.1) Potri.016G057700 [exp] 307 / 1e-101 AT3G10140 423 / 2e-147 RECA homolog 3 (.1) Potri.001G438900 [exp] 252 / 2e-79 AT1G79050 609 / 0.0 recA DNA recombination family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021585 [exp] 535 / 0 AT2G19490 545 / 0.0 recA DNA recombination family protein (.1) Lus10017151 [exp] 520 / 0 AT2G19490 538 / 0.0 recA DNA recombination family protein (.1) Lus10042033 [exp] 291 / 1e-95 AT3G10140 378 / 4e-130 RECA homolog 3 (.1) Lus10018037 [exp] 294 / 3e-95 AT3G10140 385 / 2e-131 RECA homolog 3 (.1) Lus10042462 [exp] 258 / 7e-82 AT1G79050 637 / 0.0 recA DNA recombination family protein (.1.2) Lus10026204 [exp] 258 / 9e-82 AT1G79050 642 / 0.0 recA DNA recombination family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00154 [poplar] [flax] RecA recA bacterial DNA recombination protein
Representative CDS sequence Show only first row Show all	>Potri.006G148700.2 pacid=42769294 polypeptide=Potri.006G148700.2.p locus=Potri.006G148700 ID=Potri.006G148700.2.v4.1 annot-version=v4.1 ATGGCGAGGCTTCTTCGAAACGCTTCGTCTCTGAGACGCGCTCTTGTTGCTCCCGAGGGAATAAGGAGAGGGGTGTTGGGAACATCGACTCAGATATGCA ATTTTGCTACAAAAGGTAAAAGAAAATCCAAGTCAGATGGGAGTGAGTCTGGTGAAGAAAATATGTCAAAGAAAGAGTTGGCCTTACAACAAGCTCTTGA CCAAATTACTAGTCAATTTGGAAAGGGAGCTATCATGTGGTTTGGCCGTTCCGAAGCTCCCAAAAATGTCCCAGTCGTGTCGACGGGTTCTTTTGCTCTT GATATTGCACTCGGATGTGGTGGATTTCCAAAGGGTCGTGTGGTGGAGATTTTTGGTCCTGAGGCTTCTGGGAAAACCACTCTTGCTTTGCATGTAATTG CTGAAGCACAGAAGCAAGGAGGTTACTGTGTCTTTGTTGACGCCGAGCATGCCCTTGATTCATCATTAGCTAAGGCTATTGGGGTGAACACTGAGAACTT GCTTCTTTCGCAACCTGATTGTGGCGAACAAGCTCTCAGTCTTGTGGATACTCTCATACGGAGTGGTTCTGTTGATGTTGTTGTTGTTGATAGTGTAAGT AAGGTAGCTGCACTTGTGCCTAAAAGTGAACTTGATGGAGAGATGGGTGATGCACATATGGCAATGCAAGCCAGATTGATGAGTCAGGCACTTCGCAAAC TGAGCCACTCTTTATCGCAGTCACAAACTATTTTGGTCTTTATAAATCAGGTGAGGGCAAAGCTTTCAACTTTTGGATTTGGTGGGCCCACTGAAGTAAC CTGTGGTGGTAATGCTCTGAAGTTCTATGCTTCAGTTCGCCTAAACATTAGAAGGGTGGGGTTTATCAAGAAGGGAGAAGAGACAACAGGAACTCAAGTC CAAGTGAAGATAGTGAAGAATAAGCTTGCTCCTCCTTTTAAAACAGTTCAATTTGAGCTTGAGTTTGGAAAGGGAATAAGTCGTGAATCAGAGATCATAG AATTGGCGTTGAAACACAAGCTCATCAAGAAAAGTGGCTCATTTTATGATTGTAATGGTAAAAAATACCATGGCAAGGAAGCATTCAAGGAGTTTCTAGC TCATAATGATGATGTACAGGAAGAGCTTATGATGAAGCTTAGGGAGAAGCTACTTGAAGGTGAGACAGGTCAGGAACTGGGAGATGAGTCTACAGATGGA GAACCCACTCAAGAAATCATCTCACCTGATTCTACTGATGAAGAAGTTGCTGCAGCTGAAGCATAG
AA sequence Show only first row Show all	>Potri.006G148700.2 pacid=42769294 polypeptide=Potri.006G148700.2.p locus=Potri.006G148700 ID=Potri.006G148700.2.v4.1 annot-version=v4.1 MARLLRNASSLRRALVAPEGIRRGVLGTSTQICNFATKGKRKSKSDGSESGEENMSKKELALQQALDQITSQFGKGAIMWFGRSEAPKNVPVVSTGSFAL DIALGCGGFPKGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVS KVAALVPKSELDGEMGDAHMAMQARLMSQALRKLSHSLSQSQTILVFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIRRVGFIKKGEETTGTQV QVKIVKNKLAPPFKTVQFELEFGKGISRESEIIELALKHKLIKKSGSFYDCNGKKYHGKEAFKEFLAHNDDVQEELMMKLREKLLEGETGQELGDESTDG EPTQEIISPDSTDEEVAAAEA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19490			recA DNA recombination family ...		Potri.006G148700 [exp]	0	1
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Potri.001G417300 [exp]	1.41	0.8247	FIE.1,PGE901
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Potri.009G170700 [exp]	3.87	0.8217	HDA902,RPD3.1
AT2G30140			UDP-Glycosyltransferase superf...		Potri.009G077500 [exp]	3.87	0.8107
AT2G47300			ribonuclease Ps (.2.3)		Potri.002G194100 [exp]	5.91	0.8261
AT1G55150			DEA(D/H)-box RNA helicase fami...		Potri.003G038300 [exp]	8.00	0.7965
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Potri.014G102800 [exp]	23.49	0.7465
AT5G51140			Pseudouridine synthase family ...		Potri.015G101300 [exp]	23.62	0.7741
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.001G122800 [exp]	24.00	0.7746
AT4G01240			S-adenosyl-L-methionine-depend...		Potri.002G165300 [exp]	28.24	0.7687
AT1G21830			unknown protein		Potri.005G177600 [exp]	34.64	0.7595

Compare expression of checked genes

Potri.006G148700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.