Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56960 204 / 5e-59 bHLH bHLH041 basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G63650 66 / 3e-11 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT2G46510 63 / 4e-10 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G32640 60 / 3e-09 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G36930 58 / 1e-08 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00050 58 / 1e-08 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67110 55 / 2e-08 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G17880 56 / 4e-08 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G41315 56 / 4e-08 bHLH MYC6.2, GL3 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00870 55 / 1e-07 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128000 [exp] 67 / 2e-11 AT5G41315 561 / 0.0 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G172101 [exp] 66 / 7e-11 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.001G103600 [exp] 65 / 8e-11 AT5G41315 582 / 0.0 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G083500 [exp] 63 / 3e-10 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G208600 [exp] 62 / 7e-10 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G103700 [exp] 61 / 1e-09 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G147300 [exp] 60 / 2e-09 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G066500 [exp] 59 / 6e-09 AT4G00050 303 / 5e-99 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 59 / 8e-09 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017152 [exp] 173 / 7e-47 AT5G56960 196 / 4e-56 basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10024811 [exp] 57 / 2e-08 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042572 [exp] 55 / 2e-08 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10028175 [exp] 57 / 3e-08 AT4G00050 232 / 2e-71 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10004575 [exp] 57 / 3e-08 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004574 [exp] 56 / 6e-08 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10020503 [exp] 55 / 6e-08 AT4G37850 187 / 4e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005999 [exp] 56 / 8e-08 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 56 / 8e-08 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 56 / 9e-08 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G148800.2 pacid=42769356 polypeptide=Potri.006G148800.2.p locus=Potri.006G148800 ID=Potri.006G148800.2.v4.1 annot-version=v4.1 ATGATGGACGCCGTCTTCCTGCTCAGTGAAGTAGAGCGTGCCAACTTTCTCCGATATTTCATGCAGTGTTTTGGCAGCACTTACATCTGTCTTTGGTCAT ATTTACCTCAACCATCTAACTATTTATTCTTCTGGGATGGATATTACCATGAAGAAAGCAATCAGCCCAGCTCTTCTTCAGGGAGTGTTGCCAGGATGCT TTTCGATCAGTATCGACAGGAACGATTCTTTGCTGTAAACGACCGTGTTCCCGGAGTTGCATTCAAAAACAAAATTCCCTTCATAGAACTAAAGGAATTT GAGCTTCAAAGATCGGCGTCTACGGATGCACAGAGGCGATTTTATCAGGAAGCAAGGATTAAGACTGCAGTCTTCATGGGGTGCAATAGTGGGGAAATTG AGTTAGGCTGGTCCAATGCAACTCACCAATTTAACATTGAAAATGAAATGAGGAATTGGTTCCCGAAGGACTTCTCTCGGCAATCTCCATTAAGAGAACT TCCGCTAGTAGTTGATCCAAACATACCCTCATCATCTTCATCCTCCCTGAGATCGCTATCCATGGATAGCCCAGAGATCTCTTCTCTTATCTTCACTATT CCAAGCTCATCTCACATGCCAGAGGCACATCGAGAGGCTCCCTCATTGCTGCCACCAATATTGCCAAGCACAAGCAGTCCACTCCAACATACATTGCAAT TGCTGCAACCAGTACTGCCGACACCAACGGGTAATATTCTGCAACAAGTATTGCAGTCTTTGCAACAAGAACCTAGCCCACAGCAGCAAGCAATTCAATC TTCGCAATCAACACCAAGCACAACTAGTCTACTTCAAGAAGCCATGCAACCTTTGCAAGCAATACAAAGCAGCACTAGCCCACACCAACAAGCCCTGCAA GCGTTTGCCCTAGAACGAAACATTCAACTGCCAACTCCAGAGAGTGAAGATGCTGTAATGACAAGAGCCATCCTTGCAGTTTTAACTTTCCCTTCCCCTT CTTCCTCTTCTTCTTCACATAGTTTGCCTCATATGCACCGGGTACGCCAGGGAGCTAGCGCCTTCAACAATTATCGATCGGCTCTAGCCCCCAAAACGCA AACAAGAGCCAGTTTACACAGACATAGTATGCTTACACGAGTAATTACCTATTACAGACGCTTAAATATTGAAAGACGTGAACATATGCTCGGAGGCCGC CCATCAAGCACACAGTTGCACCATATGATATCAGAGAGGAAAAGGCGAGAAAAGATTAATGAAAGCTTTAAAGCATTGAGATCAATTCTTCCCCCAGAAG CTAAGAAAGATAAAGCATCTATCCTTACTCGAACAAGGGAGTACTTGACATCTTTGAAGGCTCAAGTTGAGGAACTTACTCGCAAGAACCAGAAGTTAGA AGCACAACTTTCAAAAGCTGCAGTTTCACAAGTAAGGGATTCATCATACGAAAGACTTGATGTCCGGGTTACACACATATCTGAATCAACATCTGAACAA CGGATTATAGACTTGGTAGTGAATCTAAGAGGAGAAAGCCCCATTTTGGACACGGTAATTACTAGGATATTGGAGTTCTTAAGACAAGTTACGGATGTGA GCTTGATATCCATTGAAGCCAGCACACATACAGCAGAATCAACTTCTTTTAATCGAGTGATTCTAAGGCTCAATATTGAGGGGACTGACTGGGACGAGTC TGGCTTCCAGGAAGCAGTGAAGAGGGTTGTTGAAGATCTGGCACGTTGA
AA sequence Show only first row Show all	>Potri.006G148800.2 pacid=42769356 polypeptide=Potri.006G148800.2.p locus=Potri.006G148800 ID=Potri.006G148800.2.v4.1 annot-version=v4.1 MMDAVFLLSEVERANFLRYFMQCFGSTYICLWSYLPQPSNYLFFWDGYYHEESNQPSSSSGSVARMLFDQYRQERFFAVNDRVPGVAFKNKIPFIELKEF ELQRSASTDAQRRFYQEARIKTAVFMGCNSGEIELGWSNATHQFNIENEMRNWFPKDFSRQSPLRELPLVVDPNIPSSSSSSLRSLSMDSPEISSLIFTI PSSSHMPEAHREAPSLLPPILPSTSSPLQHTLQLLQPVLPTPTGNILQQVLQSLQQEPSPQQQAIQSSQSTPSTTSLLQEAMQPLQAIQSSTSPHQQALQ AFALERNIQLPTPESEDAVMTRAILAVLTFPSPSSSSSSHSLPHMHRVRQGASAFNNYRSALAPKTQTRASLHRHSMLTRVITYYRRLNIERREHMLGGR PSSTQLHHMISERKRREKINESFKALRSILPPEAKKDKASILTRTREYLTSLKAQVEELTRKNQKLEAQLSKAAVSQVRDSSYERLDVRVTHISESTSEQ RIIDLVVNLRGESPILDTVITRILEFLRQVTDVSLISIEASTHTAESTSFNRVILRLNIEGTDWDESGFQEAVKRVVEDLAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56960	bHLH	bHLH041	basic helix-loop-helix (bHLH) ...		Potri.006G148800 [exp]	0	1
AT5G57580			Calmodulin-binding protein (.1...		Potri.004G035100 [exp]	12.72	0.8141
AT5G63380			AMP-dependent synthetase and l...		Potri.012G094800 [exp]	15.93	0.8134
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Potri.008G129800 [exp]	31.62	0.7311
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.002G129100 [exp]	44.82	0.7587
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Potri.019G055200 [exp]	115.59	0.7132
AT2G33490			hydroxyproline-rich glycoprote...		Potri.003G166300 [exp]	139.64	0.7033
AT1G76410		ATL8	RING/U-box superfamily protein...		Potri.002G006400 [exp]	167.33	0.6596
AT1G58420			Uncharacterised conserved prot...		Potri.014G006300 [exp]	200.00	0.6636
AT5G14760		AO	L-aspartate oxidase (.1)		Potri.001G348600 [exp]	213.32	0.6645
AT1G17520	MYB		Homeodomain-like/winged-helix ...		Potri.006G147400 [exp]	240.94	0.6545

Compare expression of checked genes

Potri.006G148800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.