Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29750 315 / 3e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G14510 271 / 2e-84 ATCFM3B CRM family member 3B (.1) AT3G23070 268 / 3e-83 ATCFM3A CRM family member 3A (.1) AT3G18390 220 / 1e-65 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 193 / 1e-55 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT5G16180 150 / 5e-41 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) AT3G25440 110 / 1e-27 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT2G28480 102 / 8e-25 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT4G13070 91 / 1e-20 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G27550 80 / 1e-16 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G077100 [exp] 278 / 5e-87 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.012G056100 [exp] 229 / 5e-69 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.001G350801 [exp] 196 / 2e-56 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.017G116700 [exp] 158 / 2e-43 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.014G176900 [exp] 108 / 1e-26 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.007G129600 [exp] 100 / 7e-24 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.013G083000 [exp] 94 / 6e-22 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G343700 [exp] 80 / 1e-16 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.006G163100 [exp] 51 / 6e-07 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027610 [exp] 351 / 2e-115 AT4G29750 676 / 0.0 CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10022091 [exp] 267 / 5e-82 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10001187 [exp] 262 / 2e-79 AT3G23070 879 / 0.0 CRM family member 3A (.1) Lus10009671 [exp] 239 / 9e-73 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009031 [exp] 239 / 1e-72 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10039467 [exp] 189 / 4e-54 AT3G01370 939 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10033576 [exp] 164 / 9e-46 AT5G16180 665 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10017618 [exp] 153 / 3e-43 AT5G16180 252 / 1e-76 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10009566 [exp] 113 / 1e-28 AT3G25440 431 / 4e-149 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10020391 [exp] 113 / 2e-28 AT3G25440 427 / 1e-147 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [poplar] [flax] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Potri.006G148901.1 pacid=42767549 polypeptide=Potri.006G148901.1.p locus=Potri.006G148901 ID=Potri.006G148901.1.v4.1 annot-version=v4.1 ATGACCTCAGCCTTTATTGGATCAAGTGTCAAAACTACTAAAGGCCCCTTGGTTGCTGGAACACTCGTTGAAACTGTGGCAGCTATCTCTCGCTGGGGGA ACCAACCAAGCAGTGAAGATGTGGAGGAAATGATAAGAGATTCAGCTTTGGCTAGACATGCTTCATTAGTGAAACATCTCGAGAATAAACTAGCTCAGGC AAAAGGAAAACTCAAAAAATCTGAGAAGGATCTGGCAAAAGTACAGGAGAATCTGGAACCGACTGAACTCCCAACAGATCTGGAAACCATAAGTGATGAG GAGAGGTTCTTGTTCCGTAAGATTGGTCTGAGTATGAAACCCTATCTCTTTCTAGGGAGGCGAGGTGTCTTTGATGGTACCATAGAAAATATGCACTTGC ACTGGAAGTATCGTGAGTTGGTGAAGATAATTGTGGAACGAAAAGGTATTGCACAAGTCAAGCATATTGCAATTTCTTTGGAGGCTGAGAGTGGTGGTGT ATTAGTCTCTGTGGATAGAACTACGAAAGGTTATGCCATAATTGTCTATCGTGGGAAGAATTATATGCGCCCCCGGGCAATGAGACCTGAGAATTTATTG ACGAGGAGGCAGGCATTGGCCAGATCAGTGGAACTTCAGAGATATGAGGCTCTGAAGCATCATATCACAGATTTACAGGAAAGAATTGAGTTGGTCACGT CTGAACTTGAGGAGATGGAAGCTGACAAGAAATCTGAAGTGTACAAAGCCTTGTACTCAAAGTTTGATGATGCTTCTATTCTCAATGAAGATGAAGAGGG TGAAGAAGAGCCTATCTTGAAAGTACAGTACCCTAACAGTGAGGAGGACAAGCTAGAAGACGTACCAGTCTATGATTCCAGCTGA
AA sequence Show only first row Show all	>Potri.006G148901.1 pacid=42767549 polypeptide=Potri.006G148901.1.p locus=Potri.006G148901 ID=Potri.006G148901.1.v4.1 annot-version=v4.1 MTSAFIGSSVKTTKGPLVAGTLVETVAAISRWGNQPSSEDVEEMIRDSALARHASLVKHLENKLAQAKGKLKKSEKDLAKVQENLEPTELPTDLETISDE ERFLFRKIGLSMKPYLFLGRRGVFDGTIENMHLHWKYRELVKIIVERKGIAQVKHIAISLEAESGGVLVSVDRTTKGYAIIVYRGKNYMRPRAMRPENLL TRRQALARSVELQRYEALKHHITDLQERIELVTSELEEMEADKKSEVYKALYSKFDDASILNEDEEGEEEPILKVQYPNSEEDKLEDVPVYDSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Potri.006G148901 [exp]	0	1
AT1G27510			Protein of unknown function (D...		Potri.015G075000 [exp]	1.41	0.9802
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.008G035500 [exp]	2.00	0.9772
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Potri.009G116200 [exp]	2.44	0.9785
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Potri.010G077100 [exp]	3.16	0.9769
AT3G59040			Tetratricopeptide repeat (TPR)...		Potri.001G220300 [exp]	3.46	0.9757
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Potri.011G009600 [exp]	4.00	0.9665
AT5G04810			pentatricopeptide (PPR) repeat...		Potri.008G017400 [exp]	5.19	0.9660
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Potri.013G067200 [exp]	7.00	0.9672
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Potri.001G350801 [exp]	8.48	0.9564
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Potri.017G148700 [exp]	9.48	0.9590

Compare expression of checked genes

Potri.006G148901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.