Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05800 84 / 3e-18 unknown protein AT3G11290 76 / 3e-15 unknown protein AT3G11310 58 / 2e-09 unknown protein AT2G19220 49 / 2e-06 unknown protein AT2G24960 42 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230401 [exp] 570 / 0 AT5G05800 100 / 4e-23 unknown protein Potri.003G192350 [exp] 570 / 0 AT5G05800 100 / 4e-23 unknown protein Potri.013G144650 [exp] 569 / 0 AT5G05800 93 / 5e-21 unknown protein Potri.007G062850 [exp] 569 / 0 AT5G05800 93 / 5e-21 unknown protein Potri.014G091925 [exp] 569 / 0 AT5G05800 93 / 5e-21 unknown protein Potri.005G135800 [exp] 566 / 0 AT5G05800 100 / 3e-23 unknown protein Potri.019G061000 [exp] 528 / 0 AT5G05800 89 / 9e-20 unknown protein Potri.001G299100 [exp] 526 / 0 AT5G05800 94 / 3e-21 unknown protein Potri.005G153700 [exp] 521 / 0 AT5G05800 94 / 2e-21 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016838 [exp] 52 / 1e-07 AT2G24960 71 / 4e-14 unknown protein Lus10014257 [exp] 48 / 4e-06 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025958 [exp] 47 / 6e-06 AT2G24960 102 / 4e-24 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF12776 [poplar] [flax] Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G149001.1 pacid=42767579 polypeptide=Potri.006G149001.1.p locus=Potri.006G149001 ID=Potri.006G149001.1.v4.1 annot-version=v4.1 ATGGGAATGAGACCTAATACTCATTTCGATAAACCGGGGTGGAAATTTCTTATAACATCATTTAAAGAACAAACTGGGCATGCATTTACTAAAACACAAT TGAAAAACAAATGGGATGGATGCAAAAAGGATTGGAGGATATGGAATAAGCTGGTTTCTGAAACCGGTGTTGGCTGGAATAGTGAATTAGGCACAATTGC AGCTAGTGATGAGTGGTGGAAACAAAAAATTCAGGAAATTAGAGGAGCCAAAAAATTCAGACATGTCGGTATTGAGCCGTCTTTAAAGAATAAATTTGAC CGAATGTATTCCAACATTGTCGCAACTGGAGCGTTTGCATGGGCTCCTTCATCAGGTGTACCTGCTGGCAGTGGTGTTGATCCTGGTACAAGCAATGCCG ACATTGCTGATGATGGTTTGGAAGAGGGCAGCGGTGATTCGGAGGAAGATGTGATTCCAGATTTCCAGACTGATATGGCTCGAATGGTTGGAGGGATACA TATGTCTAGCAGCACCAATACAAAAAGCGGCGAGAAAAGAAAAGAACGAGATCATTATGATGTGCGAGGTAGAAAGAAGAAAACATCTGGAATTGGTGTT AAGTTGCTGACAAGGTGCAATCATCTACTTGAGAGTATGTCAACTAAGAGTGATTCGACGTCTGTTAATATGGATCGTGAAGGCTGTAGTATTCCCGAGG TCATGGCTGAACTGCACTCCATTCCTGGAGTTTCAGTTGACGATGATTTTCATGACTTCGCTACGGAGTATCTTAGTCTAAGAAGGAAAAGAGAAATGTG GTCCAGTATGGGCGATATGCAACAGAAGTTGCGATGGTTGCAGCGAATGTATGAACGAAGTAAACGTGCTTAG
AA sequence Show only first row Show all	>Potri.006G149001.1 pacid=42767579 polypeptide=Potri.006G149001.1.p locus=Potri.006G149001 ID=Potri.006G149001.1.v4.1 annot-version=v4.1 MGMRPNTHFDKPGWKFLITSFKEQTGHAFTKTQLKNKWDGCKKDWRIWNKLVSETGVGWNSELGTIAASDEWWKQKIQEIRGAKKFRHVGIEPSLKNKFD RMYSNIVATGAFAWAPSSGVPAGSGVDPGTSNADIADDGLEEGSGDSEEDVIPDFQTDMARMVGGIHMSSSTNTKSGEKRKERDHYDVRGRKKKTSGIGV KLLTRCNHLLESMSTKSDSTSVNMDREGCSIPEVMAELHSIPGVSVDDDFHDFATEYLSLRRKREMWSSMGDMQQKLRWLQRMYERSKRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05800			unknown protein		Potri.006G149001 [exp]	0	1
AT5G05800			unknown protein		Potri.013G144650 [exp]	3.00	0.9476
AT5G05800			unknown protein		Potri.007G062850 [exp]	3.46	0.9471
AT5G05800			unknown protein		Potri.019G061000 [exp]	15.65	0.9027
					Potri.006G040201 [exp]	16.43	0.9371
AT1G32583			unknown protein		Potri.010G145501 [exp]	23.68	0.9303
AT3G07820			Pectin lyase-like superfamily ...		Potri.007G035800 [exp]	24.49	0.7834
AT3G11310			unknown protein		Potri.010G018401 [exp]	26.49	0.8378
AT2G05920			Subtilase family protein (.1)		Potri.001G113533 [exp]	33.49	0.9303
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G177300 [exp]	34.98	0.9303
AT4G30880			Bifunctional inhibitor/lipid-t...		Potri.009G048900 [exp]	35.70	0.9303

Compare expression of checked genes

Potri.006G149001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.