Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29510 597 / 0 ATPRMT1B, ATPRMT11 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) AT2G19670 562 / 0 ATPRMT1A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, protein arginine methyltransferase 1A (.1) AT3G20020 257 / 7e-82 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) AT3G12270 210 / 3e-62 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) AT3G06930 186 / 8e-54 ATPRMT4B ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, protein arginine methyltransferase 4B (.1.2) AT1G04870 181 / 3e-53 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2) AT5G49020 183 / 9e-53 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) AT4G16570 60 / 2e-09 ATPRMT7 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067200 [exp] 705 / 0 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.007G000300 [exp] 256 / 7e-82 AT3G20020 582 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.001G030200 [exp] 215 / 1e-63 AT3G12270 674 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Potri.010G014600 [exp] 188 / 2e-54 AT5G49020 764 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.008G222700 [exp] 186 / 2e-53 AT5G49020 762 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.018G071200 [exp] 179 / 3e-52 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Potri.014G004000 [exp] 83 / 3e-18 AT3G20020 305 / 9e-104 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.003G076500 [exp] 66 / 2e-11 AT4G16570 877 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000982 [exp] 618 / 0 AT4G29510 619 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10040546 [exp] 614 / 0 AT4G29510 617 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10008577 [exp] 564 / 0 AT4G29510 553 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10010162 [exp] 251 / 1e-80 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10017367 [exp] 251 / 4e-79 AT3G20020 636 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10008664 [exp] 196 / 8e-57 AT3G12270 610 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10026158 [exp] 190 / 2e-54 AT3G12270 613 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10043412 [exp] 185 / 5e-53 AT5G49020 770 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10034172 [exp] 181 / 1e-51 AT5G49020 743 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10043295 [exp] 177 / 1e-51 AT1G04870 553 / 0.0 protein arginine methyltransferase 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13847 [poplar] [flax] Methyltransf_31 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.006G149400.2 pacid=42769803 polypeptide=Potri.006G149400.2.p locus=Potri.006G149400 ID=Potri.006G149400.2.v4.1 annot-version=v4.1 ATGGGCCGTCGGAAGAACAATCAGACCTCAACGAGCCTCAACAACACTCAGCACCAGGCCACCAAAGTCTGCTTCGACGACGACGAAGAAGAAGAGAACA TCAATCTCGATGACTCTATTGTAGCCACTGAAAAAGCCATTGCTATGGATGACGTAACTATGTCCGACCCCAACGCCCCCTTTGTTGACGGCGGCGATGA TGATAAAACCAGCGCCGATTATTACTTCGATTCATACTCTCACTTTGGTATTCATGAAGAAATGCTGAAGGATGGAGTGAGAACTAAAACATACCAAAAC GTTATTTTTCAGAATAAATTTTTATTTAAGGATAAAGTAGTACTTGATGTTGGTGCTGGGACTGGAATTTTGTCATTGTTTTGTGCCAAAGCTGGGGCTG CCCATGTCTATGCGGTCGAGTGCTCTCATATCGCTAACATGGCCAAAGAGATTGTTGAGTCAAATGGATTTTCCAATGTTATAACAGTTTTGAAGGGAAA GATCGAAGATATTGAGCTACCAGTTGCTAAAGTGGACATAATTATTTCAGAGTGGATGGGATATTTTCTGTTGTTTGAGAACATGTTAAACTCAGTCCTG TACGCACGTGATAAATGGCTTGTCAGTGACGGAATTGTGCTGCCAGACAAAGCTTCTCTCTATTTGACAGCCATTGAGGATGCTGAATACAAAGAAGATA AGATTGAGTTTTGGAATAATGTCTATGGCTTTGATATGACCTGCATCAAGAAGCAGGCCATGGGGGAACCTCTTGTTGACACTGTAGATCAGAATCAAAT TGTTACAAATTGCCAGCTGCTCAAGACAATGGACATCTCTAAAATGGTTTCTGGGGATACTTCCTTCACAGTTCCTTTTAAGCTTGTAGCAGAACGTGAT GATTACATCCATGCATTAGTAGCCTACTTTGATGTATCATTTACAAAGTGTCACAAGTTGATGGGATTCTCTACAGGGCCAAGATCACGAGCTACACATT GGAAACAGACAGTCCTATACCTAGAAGATGTGCTAACCATTTGTCAAGGGGAGGCACTAATTGGGAGCATGACTGTCGCACCAAACAAGAAGAATCCTCG GGACATTGATATAACGATCAACTATTCATTGAATGGCCGACGCTGTGTGGCCTCAAGAACTCAACATTATAAAATGCGATGA
AA sequence Show only first row Show all	>Potri.006G149400.2 pacid=42769803 polypeptide=Potri.006G149400.2.p locus=Potri.006G149400 ID=Potri.006G149400.2.v4.1 annot-version=v4.1 MGRRKNNQTSTSLNNTQHQATKVCFDDDEEEENINLDDSIVATEKAIAMDDVTMSDPNAPFVDGGDDDKTSADYYFDSYSHFGIHEEMLKDGVRTKTYQN VIFQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSHIANMAKEIVESNGFSNVITVLKGKIEDIELPVAKVDIIISEWMGYFLLFENMLNSVL YARDKWLVSDGIVLPDKASLYLTAIEDAEYKEDKIEFWNNVYGFDMTCIKKQAMGEPLVDTVDQNQIVTNCQLLKTMDISKMVSGDTSFTVPFKLVAERD DYIHALVAYFDVSFTKCHKLMGFSTGPRSRATHWKQTVLYLEDVLTICQGEALIGSMTVAPNKKNPRDIDITINYSLNGRRCVASRTQHYKMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Potri.006G149400 [exp]	0	1
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G067200 [exp]	2.00	0.8337	PRMT901
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Potri.005G152200 [exp]	3.46	0.8293
AT2G37990			ribosome biogenesis regulatory...		Potri.005G231000 [exp]	6.00	0.8022
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Potri.006G132600 [exp]	6.24	0.8099	Pt-RHL2.1
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.016G081700 [exp]	6.48	0.7906
AT5G25080			Sas10/Utp3/C1D family (.1)		Potri.006G264700 [exp]	8.60	0.7333
AT1G30880			unknown protein		Potri.003G155400 [exp]	9.94	0.7703
AT5G63630			P-loop containing nucleoside t...		Potri.002G169800 [exp]	10.24	0.7958
AT2G45730			eukaryotic initiation factor 3...		Potri.002G023300 [exp]	10.24	0.7616
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Potri.017G101200 [exp]	11.40	0.7703

Compare expression of checked genes

Potri.006G149400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.