Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29490 767 / 0 Metallopeptidase M24 family protein (.1) AT1G09300 146 / 1e-38 Metallopeptidase M24 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G007100 [exp] 129 / 1e-32 AT1G09300 643 / 0.0 Metallopeptidase M24 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008578 [exp] 803 / 0 AT4G29490 768 / 0.0 Metallopeptidase M24 family protein (.1) Lus10032694 [exp] 728 / 0 AT4G29490 687 / 0.0 Metallopeptidase M24 family protein (.1) Lus10010905 [exp] 114 / 8e-27 AT1G09300 642 / 0.0 Metallopeptidase M24 family protein (.1.2) Lus10031427 [exp] 110 / 8e-26 AT1G09300 637 / 0.0 Metallopeptidase M24 family protein (.1.2) Lus10037379 [exp] 69 / 3e-14 AT4G29490 59 / 3e-11 Metallopeptidase M24 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [poplar] [flax] Peptidase_M24 Metallopeptidase family M24 CL0356 [poplar] [flax] AMP_N-like PF05195 [poplar] [flax] AMP_N Aminopeptidase P, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G149500.1 pacid=42768787 polypeptide=Potri.006G149500.1.p locus=Potri.006G149500 ID=Potri.006G149500.1.v4.1 annot-version=v4.1 ATGGCTTCTTCGTCTCGTCTCCCCCCCCCAAAAGTACCGATGGAGCTTCACGCCAAGAACCGTGAAAAGCTGTTAAAATCCCTCCGTCAACATCTCACCG AAACCTCTCGTCCTCTGCACGGCTTCGTCTTTCTTCAGGGAGGCGAGGAAAAAACTCGCTACTGCACTGATCACATCGAACTCTTCAGGCAGGAGAGTTA TTTCGCTTATCTGTTTGGAGTAAAAGAGCCTGGTTTCTATGGCGCTATTGACATTGCAACAGGGAAATCTATTCTATTTGCTCCAAGATTACCGGCTGAT TATGCGGTTTGGTTAGGAGAAATAAAGCCATCATCTTGCTTTCAGCAACAATACATGGTTAGCATGGTCTATTACACAGATGAGATTGTAGGAGTTTTAC ATGAGCTCAGCAATGTATTGGAAAAACCTTTGCTTTTTCTCTTGCACGGACTTAACACTGACAGTAATAACTTCTCAAAACCAGCAGAGTTTGAGGGGAT AGAAAAGTTTGAGAAGGATTTGACTACATTGCATCCCATTTTGACTGAATGCCGTGTTTTAAAGTCAGATATGGAGCTAGCACTTATTCAGTTTGCCAAT GACATAAGCTCTGAAGCTCATGTTGAGGTTATGAGAAAAACTAGAGTTGGCATGGAAGAGTATCAATTGGAAAGCATATTTCTTCATCACACCTACATGT ATGGCGGGTGTAGGCATTGTTCATACACATGTATATGTGCTACTGGAGAAAATAGTGCTGTTCTTCACTATGGGCATGCAGCTGCTCCTAATGACAGGAC CCTGCAAGATGGAGATATGGCATTGTTTGATATGGGAGCTGAATACCAGTTCTACGGGTCTGACATTACTTGTTCATTCCCTGTGAATGGCAAGTTTACA AGTGATCAATCCCTTATATACAATGCTGTCCTTGATGCTCACAATGCTGTCATATCTGCAATGAAACCTGGAGTCAGCTGGGTAGATATGCATAAATTAG CAGAGCAGGTGATTCTTGAGTCGCTGAAAAACGGGTGCATTATTGTTGGCAATGTAGATGACATGATGATCGAGCGATTAGGTGCTGTTTTCATGCCTCA TGGTCTGGGGCATTTCCTGGGGATTGATACTCATGATCCTGGTGGCTACTTAAAGGGACTGGAGAAATTAAAAGGACCAGGATTGAAAGCTTTGCGTACT ATTCGAGAGCTTCAAGAGGGAATGGTAATAACAGTGGAGCCTGGCTGCTACTTCATTGATGCGTTGTTGGCTCCAGCAATGGAGAGTTCAAATACTGCAA AGTTTTTCGATCGTGAAGCAATTAGCAGATTTAAAGGTTTTGGTGGGGTTCGAATTGAAAGTGACGTGCATGTCACTGCTGGTGGTTGTCAGAACATGAC CAAATGTCCTCGACAGATTTCGGAAATTGAAGCAGTGATGGCGGGATCACCATGGCCACTCAACTGA
AA sequence Show only first row Show all	>Potri.006G149500.1 pacid=42768787 polypeptide=Potri.006G149500.1.p locus=Potri.006G149500 ID=Potri.006G149500.1.v4.1 annot-version=v4.1 MASSSRLPPPKVPMELHAKNREKLLKSLRQHLTETSRPLHGFVFLQGGEEKTRYCTDHIELFRQESYFAYLFGVKEPGFYGAIDIATGKSILFAPRLPAD YAVWLGEIKPSSCFQQQYMVSMVYYTDEIVGVLHELSNVLEKPLLFLLHGLNTDSNNFSKPAEFEGIEKFEKDLTTLHPILTECRVLKSDMELALIQFAN DISSEAHVEVMRKTRVGMEEYQLESIFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTLQDGDMALFDMGAEYQFYGSDITCSFPVNGKFT SDQSLIYNAVLDAHNAVISAMKPGVSWVDMHKLAEQVILESLKNGCIIVGNVDDMMIERLGAVFMPHGLGHFLGIDTHDPGGYLKGLEKLKGPGLKALRT IRELQEGMVITVEPGCYFIDALLAPAMESSNTAKFFDREAISRFKGFGGVRIESDVHVTAGGCQNMTKCPRQISEIEAVMAGSPWPLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29490			Metallopeptidase M24 family pr...		Potri.006G149500 [exp]	0	1
AT1G09620			ATP binding;leucine-tRNA ligas...		Potri.004G226700 [exp]	3.46	0.8419
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Potri.014G005000 [exp]	18.11	0.8266
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Potri.010G011300 [exp]	24.06	0.8293
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.008G150100 [exp]	27.45	0.7927
AT4G31980			unknown protein		Potri.003G209500 [exp]	28.98	0.8085
AT4G11640		ATSR	serine racemase (.1)		Potri.001G106000 [exp]	29.08	0.8040
AT5G27410			D-aminoacid aminotransferase-l...		Potri.005G039100 [exp]	29.46	0.7880	Pt-AAT.3
AT5G08520	MYB		Duplicated homeodomain-like su...		Potri.005G087700 [exp]	32.31	0.8013
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Potri.012G099600 [exp]	32.32	0.8022
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Potri.005G083100 [exp]	32.32	0.8191

Compare expression of checked genes

Potri.006G149500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.