Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ACS6,ACS3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26200 652 / 0 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT4G37770 535 / 0 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) AT4G08040 520 / 0 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1) AT5G65800 518 / 0 CIN5, ETO2, ACS5, ATACS5 ETHYLENE OVERPRODUCER 2, CYTOKININ-INSENSITIVE 5, ACC synthase 5 (.1) AT3G49700 517 / 0 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) AT2G22810 511 / 5e-180 ACC4, ACS4, ATACS4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, 1-aminocyclopropane-1-carboxylate synthase 4 (.1) AT3G61510 489 / 4e-171 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) AT4G11280 486 / 6e-170 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) AT1G01480 465 / 2e-161 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) AT5G51690 363 / 8e-122 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067000 [exp] 793 / 0 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.014G012600 [exp] 531 / 0 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.007G007800 [exp] 530 / 0 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.002G113900 [exp] 520 / 0 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.002G163700 [exp] 513 / 1e-180 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Potri.001G099400 [exp] 508 / 7e-179 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.003G132300 [exp] 498 / 9e-175 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.015G132100 [exp] 391 / 6e-132 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Potri.003G117700 [exp] 390 / 1e-131 AT1G62960 664 / 0.0 ACC synthase 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032695 [exp] 690 / 0 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10008579 [exp] 690 / 0 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10011565 [exp] 525 / 0 AT4G37770 740 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10007223 [exp] 499 / 3e-175 AT4G37770 747 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10039647 [exp] 498 / 2e-174 AT4G37770 739 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10017521 [exp] 486 / 6e-170 AT4G11280 643 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Lus10036396 [exp] 486 / 1e-169 AT3G61510 660 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Lus10007910 [exp] 485 / 2e-169 AT3G61510 659 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Lus10024673 [exp] 471 / 3e-164 AT1G01480 610 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) Lus10032301 [exp] 469 / 3e-163 AT1G01480 609 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.006G149600.1 pacid=42767880 polypeptide=Potri.006G149600.1.p locus=Potri.006G149600 ID=Potri.006G149600.1.v4.1 annot-version=v4.1 ATGGCCATAGAGATTGAGCAACCCTCTGTTGGACTCTCAAAAGTTGCAGTTTCCGAAACTCACGGAGAGGACTCCCCATACTTCGCAGGCTGGAAAGCAT ATAATGAAGACCCTTACGATGAATCATCTAATCCATCAGGAGTCATACAGATGGGACTGGCAGAAAATCAAGTTTCGTTTGATTTGTTAGAAGAGTACTT GGAACAGCATTCAGAAGCATCTAGCTGGGGAAAAGGATCGCCAGGGTTTAGAGAAAATGCCTTGTTTCAAGATTACCATGGACTCGAATCTTTCCGACAG GCAATGGCAGGTTTCATGGAGCAAATCAGAGGTGGAAGAGCAAAATTTGACCCTGACAGGGTAGTCCTGACAGCAGGAGCAACTGCTGCTAACGAGTTGT TAACCTTCATTCTAGCCAATCCTGGTGATGCTTTGCTAGTTCCAACTCCATACTATCCAGGATTTGACAGAGATTTAAGGTGGAGGACTGGTGCAAAAAT TGTACCGATACATTGTGATATCTCAAACAATTTCCAGGTCACTACTCAAGCCTTGGAAGCTGCATATGAGGGCGCAGTAGCCATGAACATCAACGTGAGA GGGGTACTTATAACCAATCCTTCAAATCCACTAGGAGTCACAATCCAGCGCTCTGTTCTGGAAGAGATTCTTGATTTTTCCACCCGCAAAAACATCCATC TTGTGTCCGACGAGATCTACTCAGGATCCACCTTCTCTTCATCTGAATTCATAAGCATTGCTGAGATCCTTGAAGCTCGTGGATATAAAGATTCAGAAAG AGTTCACATAGTTTACAGTCTTTCTAAAGATCTTGGTCTTCCAGGTTTTAGAGTTGGAACTATATACTCATATAATGACAAAGTTGTCACCACTGCGAGA AGGATGTCTAGCTTCACCTTGATTTCTTCTCAAACACAACATCTCCTGGCTTCCATGTTGTCTAACAAGAAGTTCACCGAGAATTACATCAAGGAAAATC GAGAGAGGCTAAGGAAGAGATATGAAATGATAATTCAAGGATTGAGAAGTGCCGGGATAGAGTGTTTGAAAGGTAATGCCGGACTGTTTTGCTGGATGAA TTTAAGTCCATTGTTGGAGACACCAACAAGAGAAGGTGAAGTGGCTCTTTGGAAGTCTATCCTTCACGAAGTGAAGCTAAATATATCTCCAGGCTCTTCT TGCCATTGCTCTGAACCTGGATGGTTTAGGGTATGCTTCGCTAACATGAGCGAGGAGACACTTGAAGTCGCACTCAAGAGAATACATAATTTCATGGAAC AAAGGAAAACAGCAAGCAGTTGA
AA sequence Show only first row Show all	>Potri.006G149600.1 pacid=42767880 polypeptide=Potri.006G149600.1.p locus=Potri.006G149600 ID=Potri.006G149600.1.v4.1 annot-version=v4.1 MAIEIEQPSVGLSKVAVSETHGEDSPYFAGWKAYNEDPYDESSNPSGVIQMGLAENQVSFDLLEEYLEQHSEASSWGKGSPGFRENALFQDYHGLESFRQ AMAGFMEQIRGGRAKFDPDRVVLTAGATAANELLTFILANPGDALLVPTPYYPGFDRDLRWRTGAKIVPIHCDISNNFQVTTQALEAAYEGAVAMNINVR GVLITNPSNPLGVTIQRSVLEEILDFSTRKNIHLVSDEIYSGSTFSSSEFISIAEILEARGYKDSERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTAR RMSSFTLISSQTQHLLASMLSNKKFTENYIKENRERLRKRYEMIIQGLRSAGIECLKGNAGLFCWMNLSPLLETPTREGEVALWKSILHEVKLNISPGSS CHCSEPGWFRVCFANMSEETLEVALKRIHNFMEQRKTASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Potri.006G149600 [exp]	0	1	ACS6,ACS3.1
AT3G44350	NAC	ANAC061	NAC domain containing protein ...		Potri.006G179800 [exp]	5.29	0.9936	NAC140
AT1G78860			D-mannose binding lectin prote...		Potri.011G110300 [exp]	5.74	0.9893
AT5G61710			unknown protein		Potri.014G123500 [exp]	7.14	0.9793
					Potri.003G096450 [exp]	10.58	0.9936
AT1G11050			Protein kinase superfamily pro...		Potri.005G181800 [exp]	11.66	0.9889
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G046700 [exp]	12.24	0.9902
AT4G13830		J20	DNAJ-like 20 (.1.2)		Potri.005G078801 [exp]	13.19	0.9754
					Potri.005G122150 [exp]	14.00	0.9936
					Potri.008G131750 [exp]	15.87	0.9936
AT5G15180			Peroxidase superfamily protein...		Potri.012G006900 [exp]	17.54	0.9936

Compare expression of checked genes

Potri.006G149600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.