Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19690 153 / 2e-48 PLA2-BETA phospholipase A2-beta (.1.2) AT4G29460 152 / 2e-47 PLA2-GAMMA phospholipase A2 gamma, Phospholipase A2 family protein (.1) AT4G29470 143 / 4e-44 PLA2-DELTA phospholipase A2 delta, Phospholipase A2 family protein (.1) AT2G06925 75 / 1e-17 ATSPLA2-ALPHA, PLA2-ALPHA PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132100 [exp] 77 / 1e-18 AT2G06925 228 / 9e-78 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Potri.006G070400 [exp] 76 / 5e-18 AT2G06925 216 / 4e-73 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Potri.012G049101 [exp] 65 / 3e-14 AT2G06925 157 / 4e-51 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028189 [exp] 197 / 5e-66 AT2G19690 149 / 4e-47 phospholipase A2-beta (.1.2) Lus10042892 [exp] 190 / 3e-63 AT4G29460 147 / 2e-45 phospholipase A2 gamma, Phospholipase A2 family protein (.1) Lus10011960 [exp] 75 / 2e-17 AT2G06925 204 / 3e-68 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G149700.1 pacid=42770094 polypeptide=Potri.006G149700.1.p locus=Potri.006G149700 ID=Potri.006G149700.1.v4.1 annot-version=v4.1 ATGTTCGTTGGCGTGCGCTTCTCTGTTGGAGCCCGTGTCGCTGTGGCATTGGCTTCAGTATTAATCTTCCTCTCCCTCTTCGCTGACTGCGCCAACAACA ACGATTCTCAGGAGAAATGCAGTAGAACCTGTGTTGCCCAGAACTGTAATTCGGTTGGAATTAGATACGGGAAGTATTGTGGAGTAGGGTGGACTGGGTG TCCTGGAGAGAAACCGTGTGATGATGTCGATGCCTGTTGTAAGATTCACGATGAGTGCGTCGAGAAGAAAGGTTTGAATAATATCAAGTGCCACGAGAAG TTCAAATCTTGCATAAAGAAAGTCCATAAATCCGGAAAGGTTGGGTTTTCTCGGGATTGCACTTATGAAACAGCTGTTCCTACTATGGTGCAGGGAATGG ATATGGCCATTTTACTTTCCCAGTTAGGCAGCTCAAAGATTGAACTATAA
AA sequence Show only first row Show all	>Potri.006G149700.1 pacid=42770094 polypeptide=Potri.006G149700.1.p locus=Potri.006G149700 ID=Potri.006G149700.1.v4.1 annot-version=v4.1 MFVGVRFSVGARVAVALASVLIFLSLFADCANNNDSQEKCSRTCVAQNCNSVGIRYGKYCGVGWTGCPGEKPCDDVDACCKIHDECVEKKGLNNIKCHEK FKSCIKKVHKSGKVGFSRDCTYETAVPTMVQGMDMAILLSQLGSSKIEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19690		PLA2-BETA	phospholipase A2-beta (.1.2)		Potri.006G149700 [exp]	0	1
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Potri.017G102000 [exp]	1.00	0.8420	NEMDH.1
AT5G27430			Signal peptidase subunit (.1)		Potri.006G234600 [exp]	2.44	0.8347	SPP.3
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Potri.006G263200 [exp]	4.00	0.7837
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Potri.003G143600 [exp]	4.89	0.8155	BIP.1
AT2G35795			Chaperone DnaJ-domain superfam...		Potri.006G131200 [exp]	10.90	0.7496
AT1G69460			emp24/gp25L/p24 family/GOLD fa...		Potri.010G164600 [exp]	15.19	0.7322
AT5G53280		PDV1	plastid division1 (.1)		Potri.012G032200 [exp]	17.43	0.7146
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Potri.005G241100 [exp]	18.02	0.7305
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Potri.014G109400 [exp]	20.56	0.7409
AT3G29010			Biotin/lipoate A/B protein lig...		Potri.017G085100 [exp]	22.75	0.6884

Compare expression of checked genes

Potri.006G149700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.