Plant FIBer expression Database

Potri.006G150000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G56780 327 / 2e-103 ATET2 ARABIDOPSIS EFFECTOR OF TRANSCRIPTION2, effector of transcription2 (.1)
AT5G56770 134 / 3e-35 unknown protein
AT4G26170 112 / 8e-26 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040548
[exp]
339 / 1e-108 AT5G56780 264 / 1e-83 ARABIDOPSIS EFFECTOR OF TRANSCRIPTION2, effector of transcription2 (.1)
PFAM info
Representative CDS sequence
>Potri.006G150000.6 pacid=42767397 polypeptide=Potri.006G150000.6.p locus=Potri.006G150000 ID=Potri.006G150000.6.v4.1 annot-version=v4.1
ATGGATGTCGGTGCCAGATTGAAGAGGGAAGACTATAAGCGAACCAAGCACGACTCCAGCTTCTCCAAATGGCAGCTTCTCATTGGCCCTTCTGACTGGC
AAGACTATTTCTCGGGGAAGGAAGGAGCTTCTCGATATAGGATCCACAATCTCCCAACTACTTCTGGCCCGGGACTATATGAGCTTGGTATTGCTGTTCC
TCGCTCTGGGCTGTCGCGGCGTGATGGTGGCAAGCTTGTCCGAGATGACATAGTGGTGGTTTACCTTGGACAAGCTGACAATGTTAGAACCCGACTCCAG
CAATACGGTCGTTCAGGTGCCCATTTGGGTAATACTTACTCAACTGGCCATGTGAATGATTCTAAAGATGATTCTCTTCAAAAAGGGCTAGGTTTATTTG
AAGAGATATTCTCAAGAGGCCAGTCCATTGTGTATAGATGGGCTCTTATGAAAGATAAGAGGGATGCTGAGGAAACGGAAGGTAAGCTGCTTGGCACTTT
TGATTACGCATGGAATAAAGGTAGTAATGGTACACGCCGTCCCAGTGATGTCCTTCAGAAACTCAATTCAAGGACAACTAGACCTCCAGATATTTTTCAA
TGGCTTCCATTTTCCAGTCACAAACTAGGAGGTATTAAAATCAAAGCAAGCAAGCCTCTTTCACCAGAAAAGCATGCTGGTTTTGGTGATGAGGATAGCA
AAAAATTATTCTTTGGAATTTTTAAGCTCAGCAGATCACAGCCTAGGCTAGTTACAGATAAATATGGCATTAATGAGGACTCCGATTGTATATGTGGATT
CATCATGGTTGATGGTATACCATGTAGAAGGCCACCAGTTCCAGGGGGAGAGAGATGCGAGGAACACAAAGGGAGGAGAGTTTATGGATCCAGTTACAAA
TCCATCGCACAAGGAAATTTACATTATCCACATGGAGCAAATCTAGATTCCACAACTCACAATGACCGAGAACATGAAACCACATGTGGGGTAAATTTAG
GTGATGGGACTTTTTGTAGGAAGCAAGCTGTGGCAGGGAGGAAAAGATGTGAAGAACACAAGGGGATGCGGGTTAACACCTCCGTCTTAGAGCCAGCAGC
AGAAGACAAAATCCGTATGTCTGCCCCCAGTTCGGTATTCAATTCTTTTGCTGACGGCGTAAACAACAATGCCTCATCTAAACATAATGCAGATAGTACC
TGGCAATGTGGATCTTCAAATAATCCTGTCAAGGAACATTTTCCCAATACTTGTGGAGTAATGTTGGGAAATGGTTCATTCTGCAGAAGGCAACCCATTC
TGGGAAACAAAAGATGCTGGCAGCATAAAGGCCAGAGGGTTGAATGTAACTTGTCTGGGGTAGACAGTTCAGAGCCAGCAGCAGAAGAAAAAATCCGTAT
GTCTGCCCCCAGTTCGGTATTCAATTCTTTTGCTGACAGCGTAAACAACAATGCCTCATCTAAACATAATGCAGATAGTACCTGGCAATGTGGATCTTCA
AATAATCCTGTCAAGGAACATTTTCCCAATACTTGTGGAGTAATGTTGGGAAATGGTTCATTCTGCAGAAGGCAACCCATTCTGGGAAACAAAAGATGCT
GGCAGCATAAAGGCCAGAGGGTTGAATGTAACTTGTCTGGGGTAGACAGTTCAGAGCCAGCAGTAGAAGACAAAATCCGTATGTCTGCCCCCAGTTTGGT
ATTCAATTCTTTTGCTGACAGCGTAAACAACAATGCCTCATCTAAACATAATGCAGATAGTACCTGGCAATGTGGATCTTCAAATAATCCTGTCAAGGAA
CATTTTCCCAATATTTGTGCAGTAATGTTGGGAAATGGTTCATTCTGCAGAAGGCAACCCATTCAGGGAAACAAAAGATGCTGGCAGCATAAAGGCCAGA
GGGTTGAATGTAACTTGTCTGGGGTAGACAGTTCAGAGCCAGCAGCAGAAGAAAAAATCCGTATGTCTGCCCCCAGTTCAGTATTCAATTCTTTTGCTGA
CAGCGTAAACAACAATGCCTCATCTAAACATAATGCATATAGTACCTGGCAATGTGGATCTTCAAATAATCCTGTCAAGGAACTTTTTCCCAATACTTGT
GGAGTAATGTTGGGAAATGGTTCATTCTGCAGAAGGCAACCCATTCAGGGAAACAAAAGATGTTGGCAGCATAAAGGCAAGAGGGTTGAATGTAACTTTT
CTGGGGTAGACAGTTCCTCGCTGAGGTTCGATGCACCAATTTGTGAGGTTACATTACGTGACGGTTCTGTCTGTTTGAGAGCACCTGTTCAGGGGAGGAA
GAGATGTGACCAGCACAAGGGGATGAGAGTCTCCACATCCTATCACTACTGA
AA sequence
>Potri.006G150000.6 pacid=42767397 polypeptide=Potri.006G150000.6.p locus=Potri.006G150000 ID=Potri.006G150000.6.v4.1 annot-version=v4.1
MDVGARLKREDYKRTKHDSSFSKWQLLIGPSDWQDYFSGKEGASRYRIHNLPTTSGPGLYELGIAVPRSGLSRRDGGKLVRDDIVVVYLGQADNVRTRLQ
QYGRSGAHLGNTYSTGHVNDSKDDSLQKGLGLFEEIFSRGQSIVYRWALMKDKRDAEETEGKLLGTFDYAWNKGSNGTRRPSDVLQKLNSRTTRPPDIFQ
WLPFSSHKLGGIKIKASKPLSPEKHAGFGDEDSKKLFFGIFKLSRSQPRLVTDKYGINEDSDCICGFIMVDGIPCRRPPVPGGERCEEHKGRRVYGSSYK
SIAQGNLHYPHGANLDSTTHNDREHETTCGVNLGDGTFCRKQAVAGRKRCEEHKGMRVNTSVLEPAAEDKIRMSAPSSVFNSFADGVNNNASSKHNADST
WQCGSSNNPVKEHFPNTCGVMLGNGSFCRRQPILGNKRCWQHKGQRVECNLSGVDSSEPAAEEKIRMSAPSSVFNSFADSVNNNASSKHNADSTWQCGSS
NNPVKEHFPNTCGVMLGNGSFCRRQPILGNKRCWQHKGQRVECNLSGVDSSEPAVEDKIRMSAPSLVFNSFADSVNNNASSKHNADSTWQCGSSNNPVKE
HFPNICAVMLGNGSFCRRQPIQGNKRCWQHKGQRVECNLSGVDSSEPAAEEKIRMSAPSSVFNSFADSVNNNASSKHNAYSTWQCGSSNNPVKELFPNTC
GVMLGNGSFCRRQPIQGNKRCWQHKGKRVECNFSGVDSSSLRFDAPICEVTLRDGSVCLRAPVQGRKRCDQHKGMRVSTSYHY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G56780 ATET2 ARABIDOPSIS EFFECTOR OF TRANSC... Potri.006G150000
[exp]
0 1
AT2G30280 RDM4, DMS4 DEFECTIVE IN MERISTEM SILENCIN... Potri.019G126500
[exp]
2.00 0.9191
AT1G04570 Major facilitator superfamily ... Potri.010G063800
[exp]
3.46 0.8905
AT2G43770 Transducin/WD40 repeat-like su... Potri.019G096900
[exp]
3.46 0.9056
AT3G26410 TRM11, AtTRM11 tRNA modification 11, methyltr... Potri.001G207000
[exp]
3.87 0.9043
AT5G51940 NRPE6A, NRPD6A,... RNA polymerase Rpb6 (.1) Potri.012G136900
[exp]
5.29 0.8950
AT1G51200 A20/AN1-like zinc finger famil... Potri.003G205500
[exp]
7.48 0.8805
Potri.005G152000
[exp]
7.74 0.8946
AT1G07400 HSP20-like chaperones superfam... Potri.006G073500
[exp]
9.00 0.8372
AT4G27130 Translation initiation factor ... Potri.011G134700
[exp]
12.96 0.8559
AT3G12810 CHR13, SRCAP, P... PHOTOPERIOD-INDEPENDENT EARLY ... Potri.012G057601
[exp]
15.81 0.8599

Potri.006G150000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.