Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13690 773 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G56790 742 / 0 Protein kinase superfamily protein (.1) AT1G55200 741 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G70460 310 / 2e-95 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 307 / 4e-94 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G68690 306 / 5e-94 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G10620 306 / 9e-94 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT3G24550 303 / 1e-93 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT5G38560 303 / 5e-93 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT3G24540 297 / 8e-93 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G034900 [exp] 823 / 0 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G200000 [exp] 823 / 0 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G038300 [exp] 471 / 3e-157 AT3G13690 537 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G130300 [exp] 469 / 3e-156 AT1G55200 535 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G185500 [exp] 348 / 4e-111 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 310 / 3e-95 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.005G124400 [exp] 300 / 9e-93 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.018G081300 [exp] 300 / 4e-92 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.017G110400 [exp] 301 / 5e-92 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006148 [exp] 789 / 0 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 546 / 0 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008566 [exp] 504 / 7e-171 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009559 [exp] 381 / 7e-121 AT3G13690 418 / 2e-134 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10030950 [exp] 374 / 2e-118 AT3G13690 422 / 2e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040097 [exp] 372 / 5e-118 AT1G55200 444 / 5e-145 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018944 [exp] 322 / 2e-101 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10011098 [exp] 306 / 2e-94 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 304 / 2e-93 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10003066 [exp] 304 / 5e-93 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.006G150100.1 pacid=42768530 polypeptide=Potri.006G150100.1.p locus=Potri.006G150100 ID=Potri.006G150100.1.v4.1 annot-version=v4.1 ATGAATGAGAAAGTATTTTCGTCAGTTGTGGTTGCTGGGAAAGTGGTGGTGGTTGCTGTTAAGGCGTCAAAAGAGATACCAAGGAGTGCTTTGGTGTGGG CTTTGACTCATGTTGTTCAACCTGGGGACTTCATTAAATTGCTGGTTGTCATCCCTGCTCACTCTGAGAGTAAAAAGTTGTGGGGATTCTCAAGATTAAC CAGTGACTGCACTACTGGTCACTGGAAGTCCCAATCAGGAACCTGGTTGGATAAAAAAGACTATGTTTCGGATTTGTTCTCTGAAATGATGCTTCATCTC CATCATGTTTATGACCCTGAGAAGATAAAAATCAGGGTAAAAGTTGTTTCTAGCTCATCTTCCGGAGTTGTGGCTGCTGAAGTGAAGAAGGCTCAATCTA ACTGGATTATATTGGATAAACATCTGAAGCATGAGGAGAAAAGCTGCATGGGAGAGCTAAAATGCAATGTTGTGGTTATGAAACGTTCTGGAGCAAAGGT TCTCCGTTTGAATTTGATTGGATCACCAATGATGGAACCCCAGATGCCTTTGTCATTTCCATTCAATATAGAAGAAACTTCAAAAGACTTTGACAGTAAG CATGAACAGCTAGATGTACTGAGAGGGCCATTTGTGACTCCTGCAAGTAGTCCAGAGCATGAATCATCACTGACTCCAACAGATGTTGGAACATCATCAG TGTCAAGCTCAGATCCAGGGACTTCACCATTATTTCTCTCAGAAATTTATGGGAATCAGAAGAAAGAGCATTCATATATTACTGAAGGAAATTTAAGCCT TTACGAATCTGACTCTGATTCGAATACTGAAAAGCTGGCTCCTTCATCAACAAGGTTATATTTCCAGCCATGGATGGATGACATTCTTAGTTCTAGTGGT GAACTTACAAAAAATCTGGTGGAGGGTTTCAATAGGCCAAATGATACCAATCTGGCTTCCACATATAAAAACATGCTGAAGAATTTATCTAAGCTTGACC GAGAACCTGACATTGGAGTGCTGAATTACAGGACTGATCTCAACTTAAGCAAAAGTGTTAGAAAAGCAATTTCCTTGTCCACAAATGCTCCACTTGATCC TCCTCCATTGTGTTCAGTTTGTCGACACAAGACTCCCATATTTGGAAGTCCTCCTAAGTGGTTTACTTATGCTGAACTGGAACATGCTACAGATGGATTT TCACAAGAAAATTTCTTAGCCACAGGAGGATTTGGTTCTGTTCATCGAGGAATGCTAACGAATGGCCAGGTGGTTGCTGTAAAGCAAAACAAATTGGCTA GTTCTCAAGGTGATATAGAGTTCTGCTCTGAAGTTGAGGTTTTAAGTTGTGCACAACATAGAAATGTAGTGACATTAATTGGATTCTGTGTGGAGGACGG AAGAAGATTGCTGGTTTATGAATACATTTGCAATGGCTCTTTGGATTTACATCTTTTTGGATGTGATCAAGATCTGTTGAAATGGCCTGTACGACAAAAA ATCGCAGTTGGAACGGCAAGGGGGTTGAGATACCTTCATGAAGAATGTAGAGTTGGCTGTATTGTCCATCGTGATATGAGGCCGAACAATATCCTCGTCA CCCATGATTTTGAACCATTAGTTGGAGATTTTGGACTGGCAAGGTGGCAGCCAAATGGAGACATTGGGGTTGAAACAAGAATAATTGGAACATTTGGGTA TTTGGCTCCAGAATATGCTCAAAGAGGCCACATCACAGAAAAATCGGATATCTACTCATTCGGGGTAGTATTGGTGGAACTAATTACAGGACGGAAAGCT GTTGACATAAACCGACCCAAAGGTCAACAGTGCCTAACTGAATGGGCACGTCCACTCCTAGAAAAGCATGCTATTCATGAACTGGTTGATCCACGCTTAA GTAACTGCTATTCAGAGCCAGAGGTCCATAACATGTTGCAATGTGCCTCATCATGCATACAGCGGGATCCTCATTCAAGGCCTCGCATGTCACAGGTGCT CCGGATGTTGGAAGCTGGTGACATTGTCATGAATTCAACAAATCTCATAGATATTTCACAGAAAGCACCAGTGTAA
AA sequence Show only first row Show all	>Potri.006G150100.1 pacid=42768530 polypeptide=Potri.006G150100.1.p locus=Potri.006G150100 ID=Potri.006G150100.1.v4.1 annot-version=v4.1 MNEKVFSSVVVAGKVVVVAVKASKEIPRSALVWALTHVVQPGDFIKLLVVIPAHSESKKLWGFSRLTSDCTTGHWKSQSGTWLDKKDYVSDLFSEMMLHL HHVYDPEKIKIRVKVVSSSSSGVVAAEVKKAQSNWIILDKHLKHEEKSCMGELKCNVVVMKRSGAKVLRLNLIGSPMMEPQMPLSFPFNIEETSKDFDSK HEQLDVLRGPFVTPASSPEHESSLTPTDVGTSSVSSSDPGTSPLFLSEIYGNQKKEHSYITEGNLSLYESDSDSNTEKLAPSSTRLYFQPWMDDILSSSG ELTKNLVEGFNRPNDTNLASTYKNMLKNLSKLDREPDIGVLNYRTDLNLSKSVRKAISLSTNAPLDPPPLCSVCRHKTPIFGSPPKWFTYAELEHATDGF SQENFLATGGFGSVHRGMLTNGQVVAVKQNKLASSQGDIEFCSEVEVLSCAQHRNVVTLIGFCVEDGRRLLVYEYICNGSLDLHLFGCDQDLLKWPVRQK IAVGTARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPNGDIGVETRIIGTFGYLAPEYAQRGHITEKSDIYSFGVVLVELITGRKA VDINRPKGQQCLTEWARPLLEKHAIHELVDPRLSNCYSEPEVHNMLQCASSCIQRDPHSRPRMSQVLRMLEAGDIVMNSTNLIDISQKAPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13690			Protein kinase protein with ad...		Potri.006G150100 [exp]	0	1
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Potri.002G137800 [exp]	1.41	0.8649
AT1G03670			ankyrin repeat family protein ...		Potri.018G077500 [exp]	3.46	0.8915
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G105150 [exp]	4.89	0.8537
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Potri.010G136100 [exp]	5.19	0.8246
AT1G07650			Leucine-rich repeat transmembr...		Potri.001G386000 [exp]	5.47	0.8581
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.003G163600 [exp]	7.00	0.8056
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.016G075700 [exp]	7.07	0.8528	Pt-SPY.1
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Potri.005G146400 [exp]	7.21	0.8372
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385500 [exp]	8.12	0.8519
AT2G46050			Pentatricopeptide repeat (PPR-...		Potri.014G087100 [exp]	11.83	0.8233

Compare expression of checked genes

Potri.006G150100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.