Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29540 396 / 4e-138 AtLpxA bacterial transferase hexapeptide repeat-containing protein (.1.2) AT4G05210 49 / 3e-06 AtLpxD1 lipid X D1, Trimeric LpxA-like enzymes superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G039400 [exp] 42 / 0.0003 AT4G21220 359 / 2e-125 lipid X D2, Trimeric LpxA-like enzymes superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032684 [exp] 405 / 2e-141 AT4G29540 468 / 8e-167 bacterial transferase hexapeptide repeat-containing protein (.1.2) Lus10008565 [exp] 382 / 1e-131 AT4G29540 447 / 6e-158 bacterial transferase hexapeptide repeat-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0536 [poplar] [flax] HEXAPEP PF00132 [poplar] [flax] Hexapep Bacterial transferase hexapeptide (six repeats) CL0536 [poplar] [flax] PF13720 [poplar] [flax] Acetyltransf_11 Udp N-acetylglucosamine O-acyltransferase; Domain 2
Representative CDS sequence Show only first row Show all	>Potri.006G150200.12 pacid=42770615 polypeptide=Potri.006G150200.12.p locus=Potri.006G150200 ID=Potri.006G150200.12.v4.1 annot-version=v4.1 ATGGCAGCAGCTACAAATTCCATCCTCCTCAAACTCAAACCCAAAATAAAAATAAAAATCTGCAATCCACTTTTTGGCTATCCTCGCAGTAATAGTAGTG CTTCACCCTCTATCCCACACTTGTTCTCCACAACAACACTCCCATATGCAGATGCTGATTCTGATTGTTCAAGCGAGATTAAAGCCACCGCAGACGCAAA CCCTAACTTCATTCACCCCTCCGCCGACGTCCACCCTAACGCTATCATTGGCCACGGTGTTTCAGTTGGTCCATTTTGCACAATCGGGTCTTCAGTAAAG CTTGGAAATGGATGTCGATTATATCCTGGAAGCCATGTTTTCGGAAATACTGAGATTGGGGATCACTGTCTTTTGATGCCTGGAGCTGTGGTTGGTGATC ATCTTCCTGGACGTACAGTTTTGGGATGCAATAATGTTATCGGTCATCATGCTGTCATCGGTGTCAAATGCCAGGATTTGAAATACAAGCCAGGGGATGA ATGTTTTCTTCACATTGGAGACAATAACGAGATTAGAGAACATACTTCAATTCACCGATCTTCAAAATCAAGTGATAAAACGGTTATTGGTGATAACAAT CTTATCATGGGCTCCTGTCATATTGCTCATGACTGCAATATTGGCAACAATAACATTTTTGCTAACAATACTCTTCTAGCAGGCCATGTTGTTGTGGAAG ATTACACTCACACTGCTGGAGCCATTGTTGTTCATCAATTTTGCCATATTGGTTCCTTTTCTTTTGTTGGTGGTGGATCTGTGGTTTCACAAGATGTCCC AAAGTACACGATGGTGGTTGGAGAAAGAGCCGAGCTTCGCGGTTTGAATTTGGAAGGTCTTCGGCGTAATGGATTCACAGCCACAGAGATTAAGAGTTTG AGAACAGCTTACAGAAACATATTCATGCCTGTTGATTCTAATTCTACAAGTTTTGAAGAACGCATTACCAAAGTGGAAGAGGACAAAGAACTGGGTAAGA TAACTGCTGTATGTACCATGATACAGTCTCTTCGTGATTCTTTTGCTCAAAATCGCCGTGGAATATGCAAGTTCAGATATTTCAGTGGCTCTTGA
AA sequence Show only first row Show all	>Potri.006G150200.12 pacid=42770615 polypeptide=Potri.006G150200.12.p locus=Potri.006G150200 ID=Potri.006G150200.12.v4.1 annot-version=v4.1 MAAATNSILLKLKPKIKIKICNPLFGYPRSNSSASPSIPHLFSTTTLPYADADSDCSSEIKATADANPNFIHPSADVHPNAIIGHGVSVGPFCTIGSSVK LGNGCRLYPGSHVFGNTEIGDHCLLMPGAVVGDHLPGRTVLGCNNVIGHHAVIGVKCQDLKYKPGDECFLHIGDNNEIREHTSIHRSSKSSDKTVIGDNN LIMGSCHIAHDCNIGNNNIFANNTLLAGHVVVEDYTHTAGAIVVHQFCHIGSFSFVGGGSVVSQDVPKYTMVVGERAELRGLNLEGLRRNGFTATEIKSL RTAYRNIFMPVDSNSTSFEERITKVEEDKELGKITAVCTMIQSLRDSFAQNRRGICKFRYFSGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29540		AtLpxA	bacterial transferase hexapept...		Potri.006G150200 [exp]	0	1
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Potri.011G109800 [exp]	3.16	0.8275
AT3G26090		ATRGS1, RGS1	REGULATOR OF G-PROTEIN SIGNALI...		Potri.008G181500 [exp]	8.77	0.8000
AT5G07900			Mitochondrial transcription te...		Potri.015G038500 [exp]	9.16	0.8216
AT5G10620			methyltransferases (.1)		Potri.006G278500 [exp]	9.59	0.8225
AT5G13970			unknown protein		Potri.014G143800 [exp]	13.41	0.8046
AT1G07870			Protein kinase superfamily pro...		Potri.009G026500 [exp]	13.85	0.7470
AT1G10600		AMSH2	associated molecule with the S...		Potri.010G041200 [exp]	14.42	0.7784
AT5G30495			Fcf2 pre-rRNA processing prote...		Potri.010G002100 [exp]	15.62	0.8146
AT4G05440		EDA35	embryo sac development arrest ...		Potri.017G048600 [exp]	24.61	0.8022
AT1G48950			C3HC zinc finger-like (.1)		Potri.015G052400 [exp]	26.72	0.7583

Compare expression of checked genes

Potri.006G150200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.