Plant FIBer expression Database

Potri.006G150500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G29590 416 / 6e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
AT3G01660 165 / 2e-49 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G340900
[exp]
159 / 2e-46 AT3G01660 361 / 3e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040550
[exp]
468 / 2e-167 AT4G29590 429 / 3e-152 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10022301
[exp]
159 / 1e-46 AT3G01660 345 / 5e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10003648
[exp]
90 / 3e-21 AT3G01660 214 / 3e-70 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10037890
[exp]
42 / 0.0003 AT5G54400 449 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10038599
[exp]
42 / 0.0003 AT5G54400 455 / 8e-163 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF08241 Methyltransf_11 Methyltransferase domain
Representative CDS sequence
>Potri.006G150500.1 pacid=42767474 polypeptide=Potri.006G150500.1.p locus=Potri.006G150500 ID=Potri.006G150500.1.v4.1 annot-version=v4.1
ATGTCGAGGATGGTTAATCTTCTTGTACTTCCACATCCACAACAAAGGCTACCAGTTTTAGCTAGTCTTTATCCATGTCGTCTCCCCACAATTCACACGC
GTTCTGCTAATTCTGTTTCAGAATCACAGAGGAAGTGGAACATTGGATTTAAAGCACCTCGTAGGTTGGTGTTAGGACTTGGAGCCTCCTTTTGGTCGCA
GTTTATGAGTATGGCTGGTAGAGCCAGAAGCAAACATCTCATTGCCCTTGCAAAGCAAGAGGTTGTCATTGAAGAGGTATTGAAGAATGTGGATTGGCCA
CAGCAGTTTCCATTCAAGGAGGAGGATTTCCAGCGCTTTGATGAGTCTCCAGATTCATTGTTCTATGATGCTCCAAGATTTGTGACACACATTGATGATC
CAGCCATTGCTGCACTGACTAAGTACTATTCAAAGGTTTTCCCTCCCAGCAACACTCCAGGGGTCTGCATCTTGGACATGTGTAGCAGTTGGGTCAGCCA
TTTCCCAAAAGGATACAAGCAATATTCTATAGTTGGATTAGGCATGAATGAAGAAGAGCTCAAACGGAATCCAGTTCTGACTGAATATGCTGTGCAAGAT
TTAAATTTGAACCCTAAACTCCCATTTGAAGATAATTCCTTTGATGTCATAACTAATGCAGTCAGTGTTGATTACCTAGCTAAACCTATTGATGTTTTCA
AGGAGATGTGCCGAGTACTTAAGCCAGGTGGACTAGCTATAATGAGCTTCTCTAATCGTTGCTTTTGGACAAAAGCAATCTCTATATGGACATCAACCGG
TGATGCTGATCATGTAATGATTGTTGGGTCTTATTTCCATTATTCTGGAGGCTTTGAACCACCTCAGGCTGTGGATATATCTCCAAATCCTGGACGCTCA
GATCCCATGTACGTTGTTTACTCTAGAAAGGCATCTACAGCGTGA
AA sequence
>Potri.006G150500.1 pacid=42767474 polypeptide=Potri.006G150500.1.p locus=Potri.006G150500 ID=Potri.006G150500.1.v4.1 annot-version=v4.1
MSRMVNLLVLPHPQQRLPVLASLYPCRLPTIHTRSANSVSESQRKWNIGFKAPRRLVLGLGASFWSQFMSMAGRARSKHLIALAKQEVVIEEVLKNVDWP
QQFPFKEEDFQRFDESPDSLFYDAPRFVTHIDDPAIAALTKYYSKVFPPSNTPGVCILDMCSSWVSHFPKGYKQYSIVGLGMNEEELKRNPVLTEYAVQD
LNLNPKLPFEDNSFDVITNAVSVDYLAKPIDVFKEMCRVLKPGGLAIMSFSNRCFWTKAISIWTSTGDADHVMIVGSYFHYSGGFEPPQAVDISPNPGRS
DPMYVVYSRKASTA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G29590 S-adenosyl-L-methionine-depend... Potri.006G150500
[exp]
0 1
AT5G61410 RPE, EMB2728 EMBRYO DEFECTIVE 2728, D-ribul... Potri.015G062100
[exp]
2.64 0.9830
AT1G08550 AVDE1, NPQ1 ARABIDOPSIS VIOLAXANTHIN DE-EP... Potri.013G053100
[exp]
2.82 0.9809
AT5G66190 ATLFNR1 ferredoxin-NADP\(+\)-oxidoredu... Potri.005G112900
[exp]
3.46 0.9774
Potri.006G069900
[exp]
5.09 0.9672
AT4G03280 PGR1, PETC PROTON GRADIENT REGULATION 1, ... Potri.019G118500
[exp]
6.24 0.9795 PETC.1
AT1G62780 unknown protein Potri.001G119100
[exp]
6.63 0.9687
AT3G23700 Nucleic acid-binding proteins ... Potri.014G148500
[exp]
7.41 0.9747
AT3G51820 PDE325, ATG4, G... PIGMENT DEFECTIVE 325, UbiA pr... Potri.006G102100
[exp]
9.79 0.9736
AT5G58330 lactate/malate dehydrogenase f... Potri.008G031700
[exp]
10.58 0.9732
AT4G27600 NARA5 GENES NECESSARY FOR THE ACHIE... Potri.013G078600
[exp]
10.90 0.9653

Potri.006G150500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.