Plant FIBer expression Database

CDA1.1 (Potri.006G150600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol CDA1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G19570 357 / 3e-124 DESZ, AT-CDA1, CDA1 cytidine deaminase 1 (.1)
AT4G29610 257 / 1e-84 Cytidine/deoxycytidylate deaminase family protein (.1)
AT4G29600 256 / 2e-84 Cytidine/deoxycytidylate deaminase family protein (.1)
AT4G29620 234 / 3e-75 Cytidine/deoxycytidylate deaminase family protein (.1)
AT4G29640 220 / 1e-69 Cytidine/deoxycytidylate deaminase family protein (.1)
AT4G29570 194 / 2e-60 Cytidine/deoxycytidylate deaminase family protein (.1)
AT4G29630 177 / 2e-54 Cytidine/deoxycytidylate deaminase family protein (.1)
AT4G29650 164 / 3e-49 Cytidine/deoxycytidylate deaminase family protein (.1)
AT4G29580 164 / 1e-48 Cytidine/deoxycytidylate deaminase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G066400
[exp]
518 / 0 AT2G19570 385 / 2e-135 cytidine deaminase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018355
[exp]
338 / 6e-117 AT2G19570 350 / 6e-122 cytidine deaminase 1 (.1)
Lus10007654
[exp]
328 / 2e-112 AT2G19570 340 / 2e-117 cytidine deaminase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0109 CDA PF00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
CL0109 CDA PF08211 dCMP_cyt_deam_2 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence
>Potri.006G150600.1 pacid=42769064 polypeptide=Potri.006G150600.1.p locus=Potri.006G150600 ID=Potri.006G150600.1.v4.1 annot-version=v4.1
ATGGATGGACCCATATTCGTAATTGAAGCATCCGAAGCCGAATCGATGGCAAAACAATCAGGCCTCACAGTCCTCCAGCTCCTCCCAGCCCTGGTCAAAT
CAGCCCAGGCCTTGGCTCGCCCGCCGATATCCGACTACCACGTGGGTGCCGTCGGTCTTGGATCCTCCGGCCGCATCTTCTTGGGTGGCAACCTAGAATT
CCCTGGCCTCCCTCTCCATCATTCTGTCCACGCCGAACAATTCCTCATCACCAATCTCACTCTTAATGCAGAACCCTCCCTCAAATACATTGCTGTCTCC
GCCGCCCCTTGTGGCCACTGCCGTCAATTCCTTCAGGAAATCCGCCACGCCCCTGATGTACAAATCCTCATCACGGGTGATAGTACTAACAACCAGAGTT
ACAAGAATGATTTAGCAAATAAACAACAATTTGAGCCCTTGTCGTGTCTTCTACCACATAGGTTCGGACCTGATGATCTTTTGGATAAGGATATTCCCTT
GCTTTTAGAAACCCGTCATAATAACTTGTCGTTTGTAGGTGATGCTTTGTTACCAAATGGTATCTGTGCTTCTTTTGATGATCTGGAAAATGAGGCTTTA
GAGGCTGCCAATAAGTCTCATGCTCCCTTTACTAATTGCCCATCAGGGGTGGCGTTAATGGATTGTGAAGGAAAGGTTTATAGAGGGTCGTATATGGAGT
CTGCCGCCTATAATCCCAGCATAGGGCCGGTGCAGGCGGCTTTGGTGGCATATGTGATGGGAGGGAGGGGTGGTGGGTATGACAGGATTGTTGCTGCTGT
GTTGGTGGAGAAACAAGGGGCTAAGGCAAGACAGGAGCAGACGGCGAGATTGCTTTTGAAGGAGATTTCACCCAAGTGTGAGCTTAAAGTGTTTCATTGT
GGTTCCAGCTCCAGTTTCAATGGTTGTAACAATCAGAATTCCTGTTGA
AA sequence
>Potri.006G150600.1 pacid=42769064 polypeptide=Potri.006G150600.1.p locus=Potri.006G150600 ID=Potri.006G150600.1.v4.1 annot-version=v4.1
MDGPIFVIEASEAESMAKQSGLTVLQLLPALVKSAQALARPPISDYHVGAVGLGSSGRIFLGGNLEFPGLPLHHSVHAEQFLITNLTLNAEPSLKYIAVS
AAPCGHCRQFLQEIRHAPDVQILITGDSTNNQSYKNDLANKQQFEPLSCLLPHRFGPDDLLDKDIPLLLETRHNNLSFVGDALLPNGICASFDDLENEAL
EAANKSHAPFTNCPSGVALMDCEGKVYRGSYMESAAYNPSIGPVQAALVAYVMGGRGGGYDRIVAAVLVEKQGAKARQEQTARLLLKEISPKCELKVFHC
GSSSSFNGCNNQNSC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G19570 DESZ, AT-CDA1, ... cytidine deaminase 1 (.1) Potri.006G150600
[exp]
0 1 CDA1.1
AT3G55950 CCR3, ATCRR3 CRINKLY4 related 3 (.1) Potri.008G068700
[exp]
2.23 0.8132
AT5G23750 Remorin family protein (.1.2) Potri.001G107000
[exp]
10.53 0.8358
AT1G24560 unknown protein Potri.010G049400
[exp]
33.13 0.7301
AT3G04530 ATPPCK2, PEPCK2... phosphoenolpyruvate carboxylas... Potri.013G046100
[exp]
40.79 0.7882 Pt-PPCK2.1
AT1G15950 IRX4, ATCCR1, C... IRREGULAR XYLEM 4, cinnamoyl c... Potri.001G045500
[exp]
46.47 0.7854
AT2G18250 ATCOAD 4-phosphopantetheine adenylylt... Potri.005G121200
[exp]
49.47 0.7712
AT1G66920 Protein kinase superfamily pro... Potri.007G126200
[exp]
50.91 0.7354
AT2G18670 RING/U-box superfamily protein... Potri.018G098100
[exp]
50.98 0.7340
AT2G13350 Calcium-dependent lipid-bindin... Potri.001G458101
[exp]
52.23 0.7717
AT4G01500 B3 NGA4 NGATHA4, AP2/B3-like transcrip... Potri.011G005200
[exp]
54.03 0.7916

Potri.006G150600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.