Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29670 258 / 1e-87 ACHT2 atypical CYS HIS rich thioredoxin 2 (.1.2) AT4G26160 237 / 2e-79 ACHT1 atypical CYS HIS rich thioredoxin 1 (.1) AT5G61440 151 / 3e-45 ACHT5 atypical CYS HIS rich thioredoxin 5 (.1) AT1G08570 151 / 4e-45 ACHT4 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) AT2G33270 150 / 1e-44 ACHT3 atypical CYS HIS rich thioredoxin 3 (.1) AT2G35010 64 / 3e-12 ATO1 thioredoxin O1 (.1.2) AT1G07700 61 / 2e-11 Thioredoxin superfamily protein (.1.2.3) AT5G16400 60 / 5e-11 TRXF2, ATF2 thioredoxin F2 (.1) AT5G42980 58 / 7e-11 ATTRXH3, ATTRX3, ATH3 THIOREDOXIN H3, thioredoxin H-type 3, thioredoxin 3 (.1) AT3G02730 59 / 1e-10 TRXF1, ATF1 thioredoxin F-type 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G066500 [exp] 376 / 3e-134 AT4G29670 253 / 3e-85 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.013G061200 [exp] 164 / 9e-50 AT1G08570 295 / 4e-100 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Potri.019G031900 [exp] 164 / 1e-49 AT1G08570 325 / 4e-112 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Potri.019G054800 [exp] 62 / 5e-12 AT3G02730 204 / 1e-67 thioredoxin F-type 1 (.1) Potri.012G045000 [exp] 62 / 4e-11 AT3G17880 379 / 4e-131 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.007G018000 [exp] 58 / 7e-11 AT3G51030 186 / 2e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.014G029200 [exp] 59 / 2e-10 AT1G07700 233 / 6e-78 Thioredoxin superfamily protein (.1.2.3) Potri.005G232700 [exp] 54 / 2e-09 AT3G51030 162 / 5e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.006G110100 [exp] 54 / 2e-09 AT3G08710 178 / 1e-58 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040554 [exp] 302 / 7e-102 AT4G29670 265 / 7e-87 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10007994 [exp] 301 / 2e-101 AT4G29670 268 / 6e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10019087 [exp] 171 / 6e-53 AT1G08570 223 / 4e-73 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10015711 [exp] 169 / 2e-52 AT1G08570 220 / 2e-71 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10020254 [exp] 157 / 2e-47 AT1G08570 318 / 1e-109 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10002640 [exp] 156 / 7e-47 AT1G08570 320 / 2e-110 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10026878 [exp] 156 / 1e-46 AT1G08570 332 / 7e-115 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10003437 [exp] 154 / 4e-46 AT1G08570 324 / 4e-112 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10041799 [exp] 62 / 2e-12 AT3G51030 182 / 8e-61 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10028349 [exp] 62 / 3e-12 AT3G51030 179 / 1e-59 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Potri.006G150700.1 pacid=42770575 polypeptide=Potri.006G150700.1.p locus=Potri.006G150700 ID=Potri.006G150700.1.v4.1 annot-version=v4.1 ATGGCGGATGTGGTTGGATTACCATCCTTTCGCTCGCTTCGCGTCCCTTCTTATCTGCTAGCCTCCAACAACTCTACTTCTCTCCAACCCCTCCTCTCTC ATAATCAGATTAATTTTTCAGATAAGAGGATCTCTCTTTCTCGCTTCTCTTCCTCTCCCAGGGACCAATTCCTCTCTTTCAAGGTACATGCAACTGTTGC TGAAACTGACCAACCAAAATGGTGGGAGAGGAATGCAGGACCAAATATGATGGACATTCATTCGACAGATGAATTTTTGAGTGCCTTAAGTCAAGCTGAG GATAGGCTAGTAATTGTCGAATTTTATGGGACCTGGTGCGCTTCTTGTCGAGCCTTATTTCCCAAGCTCTGCAGAACAGCTGAAGACCATCCTGAAATTT TATTCCTGAAAGTCAATTTTGATGAAAACAAGCCTATGTGCAAAAGTTTGAATGTTAAGGTGCTTCCTTATTTCCACTTCTATCGAGGAGCCCATGGACA ACTTGAATCTTTTTCATGTTCACTAGCTAAGTTTCAAAAAATAAAAGATTCTATTGAGATGCACAACACAGCCCGTTGCAGCATTGGTCCTCCCAAGGGA GTTGGAGAGCTGACTCTTGAATCTGTGTCAGCGTCACAGGACAAGCCAGTAGGATCTACATGA
AA sequence Show only first row Show all	>Potri.006G150700.1 pacid=42770575 polypeptide=Potri.006G150700.1.p locus=Potri.006G150700 ID=Potri.006G150700.1.v4.1 annot-version=v4.1 MADVVGLPSFRSLRVPSYLLASNNSTSLQPLLSHNQINFSDKRISLSRFSSSPRDQFLSFKVHATVAETDQPKWWERNAGPNMMDIHSTDEFLSALSQAE DRLVIVEFYGTWCASCRALFPKLCRTAEDHPEILFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKDSIEMHNTARCSIGPPKG VGELTLESVSASQDKPVGST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Potri.006G150700 [exp]	0	1
AT2G41040			S-adenosyl-L-methionine-depend...		Potri.006G060400 [exp]	2.64	0.9727
AT1G55480		ZKT	protein containing PDZ domain,...		Potri.003G222200 [exp]	5.74	0.9707
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Potri.003G113500 [exp]	6.48	0.9710
AT4G28740			unknown protein		Potri.014G194500 [exp]	6.48	0.9669
AT3G17930			unknown protein		Potri.015G036500 [exp]	9.94	0.9610
AT4G31530			NAD(P)-binding Rossmann-fold s...		Potri.001G253900 [exp]	11.61	0.9682
AT3G01060			unknown protein		Potri.017G090100 [exp]	12.00	0.9652
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Potri.010G110400 [exp]	13.41	0.9684
AT3G24190			Protein kinase superfamily pro...		Potri.001G050700 [exp]	15.87	0.9496
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Potri.003G005800 [exp]	15.87	0.9564

Compare expression of checked genes

Potri.006G150700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.