Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29680 704 / 0 Alkaline-phosphatase-like family protein (.1) AT4G29690 541 / 0 Alkaline-phosphatase-like family protein (.1) AT4G29700 525 / 0 Alkaline-phosphatase-like family protein (.1) AT4G29710 179 / 2e-54 Alkaline-phosphatase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G066600 [exp] 827 / 0 AT4G29680 678 / 0.0 Alkaline-phosphatase-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008562 [exp] 714 / 0 AT4G29680 699 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10032681 [exp] 710 / 0 AT4G29680 699 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10034660 [exp] 566 / 0 AT4G29680 558 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10007981 [exp] 531 / 0 AT4G29680 526 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10017872 [exp] 236 / 2e-75 AT4G29680 243 / 6e-79 Alkaline-phosphatase-like family protein (.1) Lus10000041 [exp] 201 / 2e-62 AT4G29700 204 / 2e-64 Alkaline-phosphatase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [poplar] [flax] Alk_phosphatase PF01663 [poplar] [flax] Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
Representative CDS sequence Show only first row Show all	>Potri.006G150900.1 pacid=42769852 polypeptide=Potri.006G150900.1.p locus=Potri.006G150900 ID=Potri.006G150900.1.v4.1 annot-version=v4.1 ATGGGTTCTGATTCAGTTTTAACATCAACGAAGCCAACACCAATACCAACTCAAGAAGACCCACCAAGCCCATCCACTTCTCTTCTTTCTTTCAACACAG ACTCCGCTACTGATCCTTCCAATCCACACCACAAAAACACGACCAACTCCATAATCTTCATCTCTCTTGTACTTGTCACTTGCATCGCTCTCTCCGCTGC TTCTGCTTTTGCCTTTCTCTTCTTTTCCTCCTCCTCCTCATCTCCCTCTGCTACTCCTACAGAAATCCCCTCAGCTTCTCTACAAGCGACGACGCGTCCG TTGACCAAGCTCAACCACTCGGTCGTTCTCTTGATTTCTTCTGATGGGTTCAGGTTTGGCTACCAGTTCAAGACCCCTACACCAAATATTCATCGTTTGA TTGCTAATGGGACTGAAGCTGAAACGGGTTTGATTCCTGTTTTCCCTTCTCTTACATTCCCTAATCATTACTCTATTGTCACTGGCCTTTACCCTGCTTA TCATGGTATTATTAACAATCATTTTGTTGATCCAAAAACTGGAGAAGTTTTTACAATGGCAAGTCATGAGCCCAAGTGGTGGCTTGGTGAGCCAATTTGG GAGACAGTGGCTAAACAAGGGTTAAAGGCTTCTACTTATTTTTGGCCTGGTTCTGAGGTGCATAAAGGTTCTTGGACTTGCCCTCAAAAGTTTTGTATGT TTTATAATGGTTCTGTTCCTTTTGATGAACGTGTTGATACCGTTTTGAGTTATTTTGATTTGCCAGATAGTGAGATTCCTGTGTTTATGACCTTGTATTT TGAGGATCCTGATCATCAGGGTCATAAGGTGGGACCGGATGATCCGGAGATTACTGAGGCTGTTGCTGGAATTGATAGGATGATTGGGAAGTTGATTGAT GGATTAGAGGAAAGAGGGGTTTTTGAGGATGTTACTATAATTATGGTTGGTGATCATGGAATGGTTGGTACATGTGATAAAAAGTTGATATTTTTGGATG ATTTGGCTCCTTGGATTGATATTTTACCTGAATGGGTTCAGTCCTATACTCCTTTGCTTGCAATCCGTCCGCCACCTGGTTTTGCACCGTCGGCTGTTGT TGCAAAGATGAATGAAGGGTTGCAATCGGGGAAGGTTCAAAATGGAAAGAATTTGAAAATGTATCTTAAGGAGGAGCTGCCTAGTAGGCTTCATTATGCA GCAAGTGATAGAATTCCACCAATAATAGGGATGATTGACGAGGGTTTTAAGGTGGAGCAGAAGAGAACTAATAGGCAAGAATGTGGAGGAGCACATGGTT ATGACAATGCACTTTTCTCCATGAGGACAATTTTCATTGGCCATGGTCCTCAGTTTGCAAGGGGACGAAAAGTGCCATCTTTCGAGAATGTTCAGATATA CAACTTGGTTACTTCAATTCTCAATATCCAGGGTGCTCCCAATAATGGGTCTGTATCTTTTCCATCAACTGTTCTTTTGCCCAATCCTTCATAA
AA sequence Show only first row Show all	>Potri.006G150900.1 pacid=42769852 polypeptide=Potri.006G150900.1.p locus=Potri.006G150900 ID=Potri.006G150900.1.v4.1 annot-version=v4.1 MGSDSVLTSTKPTPIPTQEDPPSPSTSLLSFNTDSATDPSNPHHKNTTNSIIFISLVLVTCIALSAASAFAFLFFSSSSSSPSATPTEIPSASLQATTRP LTKLNHSVVLLISSDGFRFGYQFKTPTPNIHRLIANGTEAETGLIPVFPSLTFPNHYSIVTGLYPAYHGIINNHFVDPKTGEVFTMASHEPKWWLGEPIW ETVAKQGLKASTYFWPGSEVHKGSWTCPQKFCMFYNGSVPFDERVDTVLSYFDLPDSEIPVFMTLYFEDPDHQGHKVGPDDPEITEAVAGIDRMIGKLID GLEERGVFEDVTIIMVGDHGMVGTCDKKLIFLDDLAPWIDILPEWVQSYTPLLAIRPPPGFAPSAVVAKMNEGLQSGKVQNGKNLKMYLKEELPSRLHYA ASDRIPPIIGMIDEGFKVEQKRTNRQECGGAHGYDNALFSMRTIFIGHGPQFARGRKVPSFENVQIYNLVTSILNIQGAPNNGSVSFPSTVLLPNPS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29680			Alkaline-phosphatase-like fami...		Potri.006G150900 [exp]	0	1
AT2G43160			ENTH/VHS family protein (.1.2....		Potri.014G151300 [exp]	2.44	0.8268
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Potri.014G040300 [exp]	5.56	0.8839
AT2G41770			Protein of unknown function (D...		Potri.016G055700 [exp]	8.71	0.8586
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Potri.015G135500 [exp]	13.26	0.8184
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.008G223000 [exp]	15.65	0.8169
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.008G149300 [exp]	16.94	0.8110
AT3G02360			6-phosphogluconate dehydrogena...		Potri.004G108920 [exp]	18.33	0.7558
AT2G43160			ENTH/VHS family protein (.1.2....		Potri.002G231100 [exp]	21.54	0.7964
AT3G60380			unknown protein		Potri.014G045300 [exp]	22.64	0.8092
AT1G11480			eukaryotic translation initiat...		Potri.007G119200 [exp]	23.10	0.7349

Compare expression of checked genes

Potri.006G150900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.